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Align VIMSS104788 to PF12051 (DUF3533)

VIMSS104788 has 993 amino acids

Query:       DUF3533  [M=378]
Accession:   PF12051.8
Description: Protein of unknown function (DUF3533)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-11   27.6   0.5    7.1e-11   27.6   0.5    3.3  4  VIMSS104788  


Domain annotation for each sequence (and alignments):
>> VIMSS104788  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.5   7.1e-11   7.1e-11      19     160 ..      42     177 ..      25     212 .. 0.67
   2 ?   -5.5   3.0      0.85      0.85     119     136 ..     400     417 ..     335     471 .. 0.54
   3 ?   -2.7   0.4      0.12      0.12     137     180 ..     585     626 ..     555     691 .. 0.69
   4 !   11.0   0.6   8.1e-06   8.1e-06     163     351 ..     757     939 ..     728     961 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.1e-11
      DUF3533  19 alyrrsdrlknlnvlvVneDeg..gseltpvvgeavaqainettssslgtwtvvnpsefkeseeeveelvhkekywgaivvkenateklyaal.sa.. 111
                  a+ ++  ++ +++v+vVneD+g   ++ + +vg+++ + +++++     +w++v       s+e+  +++  +ky++ i++++ +t +++  l ++  
  VIMSS104788  42 AMWDPYGNTGHIKVAVVNEDKGdtIRGKKVNVGNTMVNTLKKNK---SFDWQFV-------SREKADHEIKMGKYFAGIYIPSKFTHEITGTLrKQpq 129
                  56777788899***********9988888888888888888777...4899999.......699**************************99943300 PP

      DUF3533 112 ngassynstelleliyesgRdattvssyilpaltqleaaalakygsqll 160
                  + ++++++++ ++ +  +  d t  s ++ +a +q+++++++++ ++  
  VIMSS104788 130 KADVEFKVNQKINAVASKLTD-TGSSVVVEKANEQFNKTVTRALLEEAN 177
                  223334444444444444443.333333333333333333333333322 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 0.85
      DUF3533 119 stelleliyesgRdattv 136
                  +t + ++  + g+++  +
  VIMSS104788 400 TTPQSTSGKKDGQSFADI 417
                  333333333333333333 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.12
      DUF3533 137 ssyilpaltqleaaalakygsqllqqliqslsntaqaaqlsnal 180
                  +s+++++ + + +++++  g++ l+++ ++l++++q+ ++ +a+
  VIMSS104788 585 NSSLVSISQRIMDELNK--GQTALSNVQSKLNTIDQVINSGQAI 626
                  45555555555555554..5555556666666666555543333 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 8.1e-06
      DUF3533 163 liqslsntaqaaqlsna.llaspiafnsidlrPftdgvalaplqvgliyliiltffqfaflgklhaemg.lsrklkfkqllvyrllisvvslfvlSlf 258
                  li +l    ++++ ++a ++a+pi+ +++d+ P++d  + +++ ++ ++ + +    ++ l  + ++   l + l  +q+++ +    +++ +  +l+
  VIMSS104788 757 LIDTL----KNDLKKQAgIIANPINKKTVDVFPVKDY-GSGMTPFYTALSVWVGALLMVSLLTVDNKHKsLESVLTTRQVFLGKAGFFIMLGMLQALI 849
                  33333....334434446****************996.4556679***99999999999999999888877888999999998888888888888888 PP

      DUF3533 259 fslvs.lafqvdftvafGragFvvyWmitwlvmaavglanenvasilgppylpvwllfwvilNvss..tfvPlelspgFYrygyal.Plhniveilr 351
                  +s+   l+++  +       ++v++ +it ++ + +  +  + +s+lg+p+ +++++++v   ++   +++P++  p+F++      P+ ++++ lr
  VIMSS104788 850 VSVGDlLILKAGV------ESPVLFVLITIFCSIIFNSIVYTCVSLLGNPGKAIAIVLLVL-QIAGggGTFPIQTTPQFFQNISPYlPFTYAIDSLR 939
                  8877767777777......788988888888877777777777888899999988776654.444445************97665557776666665 PP



Or compare VIMSS104788 to CDD or PaperBLAST