PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6583894 to PF12051 (DUF3533)

VIMSS6583894 has 510 amino acids

Query:       DUF3533  [M=380]
Accession:   PF12051.12
Description: Protein of unknown function (DUF3533)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-130  422.0  18.8   1.3e-130  421.8  18.8    1.1  1  VIMSS6583894  


Domain annotation for each sequence (and alignments):
>> VIMSS6583894  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.8  18.8  1.3e-130  1.3e-130       3     379 ..      95     485 ..      93     486 .. 0.96

  Alignments for each domain:
  == domain 1  score: 421.8 bits;  conditional E-value: 1.3e-130
       DUF3533   3 lllavlilailsiywGalykrsdrlknlnvlvVneDeg.......gselepvvgeavrdalnetkssslgtwkvinssefke.........ieeeie 83 
                    lla++++++++++wGaly++s++l+++++lvV+++         +s ++p ++ a+ + +n+++     +w+++ns  f+          +++++ 
  VIMSS6583894  95 CLLAIICFTMFVLFWGALYDTSKYLHKVKLLVVIQEPPvvildnnSSMVVPSISYALPTFINKIP----CDWDIYNSPTFQAkfdvntpqqVNDKVV 187
                   589********************************999999665556667777777777777777....99************************** PP

       DUF3533  84 elvhkekyWgalvvkenatealyaalasangassynstdllelvyesgrdptnvksyilpilqaleaaalakyssellqslikslsnssqaallan. 179
                   +lv++ekyW+a+++k+nate+l ++l  +++a+ +nst + ++vye+grdptn+ks ilp +q++e+++   y+ ++l+ l++++++  + al++n 
  VIMSS6583894 188 DLVYDEKYWFAINIKPNATETLFESL-INDTAPLFNSTLFNQVVYETGRDPTNLKSTILPVAQTIEEYYHTFYTLNYLPPLLTNITQVYRYALTNNa 283
                   **************************.899999************************************************************999* PP

       DUF3533 180 ...llasplafnsiDlrPftdavllaplqvgliyliiltffqlallgklhaqmasrklkfkqllvyRllisvislfvlSLffslvslafqvdftvaf 273
                      ++a++ +++++D rPftd++llap+q+g++y+++ltffq+ l+g+lh +m ++ l++ + l+yR+++s+ ++f+ SLff++ +++fqvdft+ f
  VIMSS6583894 284 ryiAAAGKYNYEYYDHRPFTDRILLAPTQIGVVYCLLLTFFQFLLYGPLHVEM-AKVLRPANGLIYRIAMSWFTFFFASLFFCTTTAIFQVDFTKSF 379
                   **999************************************************.******************************************* PP

       DUF3533 274 GragFvvyWmitwlvmlavglanenvasilvavgppylpfwllfwvilNvsptfvPlelspgFYryGyalPlhniveilkvIffdtskgqlgrnlGi 370
                   Gr+gFvvyWm+twl+mla g+anen ++++++ gp+yl+fw+l++vilN++p+f+Pl+l++++YryGy++P+hn+++i++vIffd+ + ++grn+Gi
  VIMSS6583894 380 GRGGFVVYWMSTWLFMLAAGGANENAVMLVITLGPQYLGFWILSFVILNIAPSFFPLALNNNVYRYGYMMPVHNVIDIYRVIFFDVTRRKMGRNYGI 476
                   ************************************************************************************************* PP

       DUF3533 371 LfaWvvvnt 379
                   L+a +++nt
  VIMSS6583894 477 LVALIALNT 485
                   *******98 PP



Or compare VIMSS6583894 to CDD or PaperBLAST