F1LVX2 has 1227 amino acids
Query: bMERB_dom [M=134]
Accession: PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-42 130.8 23.9 1.9e-42 130.8 23.9 3.6 4 F1LVX2
Domain annotation for each sequence (and alignments):
>> F1LVX2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.5 1.5 0.033 0.033 87 123 .. 191 226 .. 167 233 .. 0.81
2 ? -4.5 0.3 1 1 11 22 .. 812 823 .. 807 832 .. 0.43
3 ? -2.6 0.4 0.29 0.29 64 82 .. 859 877 .. 850 885 .. 0.49
4 ! 130.8 23.9 1.9e-42 1.9e-42 3 134 .] 1072 1206 .. 1070 1206 .. 0.98
Alignments for each domain:
== domain 1 score: 0.5 bits; conditional E-value: 0.033
bMERB_dom 87 edsekteedkkreeelleelveiVekRdelvesleed 123
ed+e +e++ ++ee +++ eiV++ ++l + l+ed
F1LVX2 191 EDNEDDDENRVNQEEKAAKITEIVNQLNALSS-LDED 226
46777788888999999**********99964.5554 PP
== domain 2 score: -4.5 bits; conditional E-value: 1
bMERB_dom 11 elkeleergvel 22
+++el+er+ +l
F1LVX2 812 RQEELKERARVL 823
233333333322 PP
== domain 3 score: -2.6 bits; conditional E-value: 0.29
bMERB_dom 64 akeqeLeeeqaeleqelre 82
++ ++L e+ ++l e r+
F1LVX2 859 ERRRQLRERARQLIAEARC 877
3344444444444444444 PP
== domain 4 score: 130.8 bits; conditional E-value: 1.9e-42
bMERB_dom 3 releeieeelkeleergvelEkkLR...eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekteedkk 97
el ++e+e+k+++ r++ +Ek+LR ++ +++eeee++++ewf Lvn+knal+rr ++L++l+ke++Le++++ l++elr +l++ed++kte++k+
F1LVX2 1072 GELAALENEQKQIDTRAALVEKRLRylmDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKR 1169
599*************************88999***************************************************************** PP
bMERB_dom 98 reeelleelveiVekRdelvesleedrlreeeedeel 134
re+ ll+elv +V+kRd+lv++l+++++++eeede+l
F1LVX2 1170 REQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHL 1206
**********************************985 PP
Or compare F1LVX2 to CDD or PaperBLAST