NP_001108067.1 has 762 amino acids
Query: bMERB_dom [M=134]
Accession: PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-41 126.0 25.4 5.4e-41 126.0 25.4 2.0 2 NP_001108067.1
Domain annotation for each sequence (and alignments):
>> NP_001108067.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.0 0.16 0.16 73 89 .. 210 226 .. 203 236 .. 0.80
2 ! 126.0 25.4 5.4e-41 5.4e-41 2 133 .. 603 737 .. 602 738 .. 0.98
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 0.16
bMERB_dom 73 qaeleqelrellekeds 89
q++l++el++l e ed+
NP_001108067.1 210 QSDLSRELKTLCEEEDE 226
8999*****99999986 PP
== domain 2 score: 126.0 bits; conditional E-value: 5.4e-41
bMERB_dom 2 qreleeieeelkeleergvelEkkLR...eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekte 93
+el+++e+e+ +++ r++e+Ek+LR es +++ +ee l++ewf+Lvn+knal+rr+++L++l +eq+Le++++ l++elr +l++e+++kt
NP_001108067.1 603 CAELQALEQEQGQIDGRAAEVEKQLRslmESGANRLQEEVLIQEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFELLSRELRAMLAIEEWQKTV 697
689*************************988999************************************************************* PP
bMERB_dom 94 edkkreeelleelveiVekRdelvesleedrlreeeedee 133
++++re+ lleelv++V++Rdelv++l+++++ + eede+
NP_001108067.1 698 AQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDER 737
**************************************97 PP
Or compare NP_001108067.1 to CDD or PaperBLAST