NP_001136087.1 has 1160 amino acids
Query: bMERB_dom [M=134] Accession: PF12130.12 Description: Bivalent Mical/EHBP Rab binding domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-43 131.9 23.9 8.5e-43 131.9 23.9 3.5 5 NP_001136087.1 Domain annotation for each sequence (and alignments): >> NP_001136087.1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.7 0.5 0.5 88 96 .. 192 200 .. 163 224 .. 0.54 2 ? -1.4 0.2 0.13 0.13 69 87 .. 775 793 .. 767 811 .. 0.51 3 ? -1.8 0.4 0.17 0.17 82 106 .. 817 841 .. 815 852 .. 0.60 4 ? -4.1 0.1 0.84 0.84 121 132 .. 958 969 .. 952 980 .. 0.68 5 ! 131.9 23.9 8.5e-43 8.5e-43 3 134 .] 1005 1139 .. 1003 1139 .. 0.98 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.5 bMERB_dom 88 dsekteedk 96 d+e +e++ NP_001136087.1 192 DNEDDDENR 200 233333333 PP == domain 2 score: -1.4 bits; conditional E-value: 0.13 bMERB_dom 69 Leeeqaeleqelrelleke 87 L ++q+el++ r lle+ NP_001136087.1 775 LLSRQEELKERARVLLEQA 793 4444444444444443332 PP == domain 3 score: -1.8 bits; conditional E-value: 0.17 bMERB_dom 82 ellekedsekteedkkreeelleel 106 +l +++d+e+ + ++r ++l++e NP_001136087.1 817 QLSDQQDEERRRQLRERARQLIAEA 841 5555666666666666666666655 PP == domain 4 score: -4.1 bits; conditional E-value: 0.84 bMERB_dom 121 eedrlreeeede 132 e++r+r ++ed+ NP_001136087.1 958 EMKRQRSIQEDT 969 556666666665 PP == domain 5 score: 131.9 bits; conditional E-value: 8.5e-43 bMERB_dom 3 releeieeelkeleergvelEkkLR...eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekt 92 el ++e+e+k+++ r++ +Ek+LR ++ +++eeee++++ewf Lvn+knal+rr ++L++l+ke++Le++++ l++elr +l++ed++kt NP_001136087.1 1005 GELAALENEQKQIDTRAALVEKRLRylmDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKT 1097 599*************************88999************************************************************ PP bMERB_dom 93 eedkkreeelleelveiVekRdelvesleedrlreeeedeel 134 e++k+re+ ll+elv +V+kRd+lv++l+++++++eeede+l NP_001136087.1 1098 EAQKRREQLLLDELVALVNKRDALVRDLDAQEKQAEEEDEHL 1139 ***************************************985 PP
Or compare NP_001136087.1 to CDD or PaperBLAST