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Align NP_001136087.1 to PF12130 (bMERB_dom)

NP_001136087.1 has 1160 amino acids

Query:       bMERB_dom  [M=134]
Accession:   PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-43  131.9  23.9    8.5e-43  131.9  23.9    3.5  5  NP_001136087.1  


Domain annotation for each sequence (and alignments):
>> NP_001136087.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.7       0.5       0.5      88      96 ..     192     200 ..     163     224 .. 0.54
   2 ?   -1.4   0.2      0.13      0.13      69      87 ..     775     793 ..     767     811 .. 0.51
   3 ?   -1.8   0.4      0.17      0.17      82     106 ..     817     841 ..     815     852 .. 0.60
   4 ?   -4.1   0.1      0.84      0.84     121     132 ..     958     969 ..     952     980 .. 0.68
   5 !  131.9  23.9   8.5e-43   8.5e-43       3     134 .]    1005    1139 ..    1003    1139 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.5
       bMERB_dom  88 dsekteedk 96 
                     d+e  +e++
  NP_001136087.1 192 DNEDDDENR 200
                     233333333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.13
       bMERB_dom  69 Leeeqaeleqelrelleke 87 
                     L ++q+el++  r lle+ 
  NP_001136087.1 775 LLSRQEELKERARVLLEQA 793
                     4444444444444443332 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.17
       bMERB_dom  82 ellekedsekteedkkreeelleel 106
                     +l +++d+e+  + ++r ++l++e 
  NP_001136087.1 817 QLSDQQDEERRRQLRERARQLIAEA 841
                     5555666666666666666666655 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 0.84
       bMERB_dom 121 eedrlreeeede 132
                     e++r+r ++ed+
  NP_001136087.1 958 EMKRQRSIQEDT 969
                     556666666665 PP

  == domain 5  score: 131.9 bits;  conditional E-value: 8.5e-43
       bMERB_dom    3 releeieeelkeleergvelEkkLR...eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekt 92  
                       el ++e+e+k+++ r++ +Ek+LR   ++ +++eeee++++ewf Lvn+knal+rr ++L++l+ke++Le++++ l++elr +l++ed++kt
  NP_001136087.1 1005 GELAALENEQKQIDTRAALVEKRLRylmDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKT 1097
                      599*************************88999************************************************************ PP

       bMERB_dom   93 eedkkreeelleelveiVekRdelvesleedrlreeeedeel 134 
                      e++k+re+ ll+elv +V+kRd+lv++l+++++++eeede+l
  NP_001136087.1 1098 EAQKRREQLLLDELVALVNKRDALVRDLDAQEKQAEEEDEHL 1139
                      ***************************************985 PP



Or compare NP_001136087.1 to CDD or PaperBLAST