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Align NP_001137683.2 to PF12130 (DUF3585)

NP_001137683.2 has 994 amino acids

Query:       DUF3585  [M=136]
Accession:   PF12130.8
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-41  125.9  24.6    6.3e-41  125.9  24.6    2.7  3  NP_001137683.2  


Domain annotation for each sequence (and alignments):
>> NP_001137683.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.6      0.82      0.82      79      98 ..     355     374 ..     349     389 .. 0.56
   2 !    4.9   2.2    0.0015    0.0015      47      85 ..     711     749 ..     691     756 .. 0.68
   3 !  125.9  24.6   6.3e-41   6.3e-41       1     136 []     839     975 ..     839     975 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.82
         DUF3585  79 eqelrelmakeekeKteedk 98 
                     eq+lr+   ke++ Kt  d+
  NP_001137683.2 355 EQDLRVESVKEDTTKTIGDN 374
                     44555555555555554433 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0015
         DUF3585  47 eLvneknelvrreseLmilareqeLedeqadleqelrel 85 
                     ++++ek +l+ ++ +L+ ++  ++ e++q  leq  r +
  NP_001137683.2 711 KMMSEKAKLMMEKRKLNKTSDANDEERQQRLLEQARRLI 749
                     456667777777777777777666666666666655544 PP

  == domain 3  score: 125.9 bits;  conditional E-value: 6.3e-41
         DUF3585   1 iqreleeieeeqreleergvelEkaLRgea.e.esgeeeeeellqewfeLvneknelvrreseLmilareqeLedeqadleqelrelmakeekeK 93 
                     i +ele++e+eq+++++++ +lE +LR  + +  ++ee+ee+ll +wf+Lvn+kn+l+rr+++L+il++e++Le+++++l+qelr+  ++e+++K
  NP_001137683.2 839 IDSELEALEREQEAIDQKASNLEAKLRAVMgGnPKTEETEEQLLSQWFTLVNKKNALLRRQMQLNILEQEKDLERKYTMLNQELRAAQSVEDWRK 933
                     678************************999734678999******************************************************** PP

         DUF3585  94 teedkereeelleelvevVeqRdelvdsleedrlreaeedeel 136
                     te ++e+e++lleel+++V++Rd+lv++l+++++ + e+d+e+
  NP_001137683.2 934 TEVQREKERLLLEELMTIVDKRDQLVQHLHNQEI-AIEDDQEI 975
                     *********************************9.99999986 PP



Or compare NP_001137683.2 to CDD or PaperBLAST