NP_001292059.1 has 1202 amino acids
Query: bMERB_dom [M=134]
Accession: PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-42 130.8 23.9 1.8e-42 130.8 23.9 3.6 4 NP_001292059.1
Domain annotation for each sequence (and alignments):
>> NP_001292059.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.5 1.5 0.032 0.032 87 123 .. 191 226 .. 167 233 .. 0.81
2 ? -4.4 0.3 1 1 11 22 .. 787 798 .. 782 807 .. 0.43
3 ? -2.5 0.4 0.28 0.28 64 82 .. 834 852 .. 825 860 .. 0.49
4 ! 130.8 23.9 1.8e-42 1.8e-42 3 134 .] 1047 1181 .. 1045 1181 .. 0.98
Alignments for each domain:
== domain 1 score: 0.5 bits; conditional E-value: 0.032
bMERB_dom 87 edsekteedkkreeelleelveiVekRdelvesleed 123
ed+e +e++ ++ee +++ eiV++ ++l + l+ed
NP_001292059.1 191 EDNEDDDENRVNQEEKAAKITEIVNQLNALSS-LDED 226
46777788888999999**********99964.5554 PP
== domain 2 score: -4.4 bits; conditional E-value: 1
bMERB_dom 11 elkeleergvel 22
+++el+er+ +l
NP_001292059.1 787 RQEELKERARVL 798
233333333322 PP
== domain 3 score: -2.5 bits; conditional E-value: 0.28
bMERB_dom 64 akeqeLeeeqaeleqelre 82
++ ++L e+ ++l e r+
NP_001292059.1 834 ERRRQLRERARQLIAEARC 852
3344444444444444444 PP
== domain 4 score: 130.8 bits; conditional E-value: 1.8e-42
bMERB_dom 3 releeieeelkeleergvelEkkLR...eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekt 92
el ++e+e+k+++ r++ +Ek+LR ++ +++eeee++++ewf Lvn+knal+rr ++L++l+ke++Le++++ l++elr +l++ed++kt
NP_001292059.1 1047 GELAALENEQKQIDTRAALVEKRLRylmDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKT 1139
599*************************88999************************************************************ PP
bMERB_dom 93 eedkkreeelleelveiVekRdelvesleedrlreeeedeel 134
e++k+re+ ll+elv +V+kRd+lv++l+++++++eeede+l
NP_001292059.1 1140 EAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHL 1181
***************************************985 PP
Or compare NP_001292059.1 to CDD or PaperBLAST