NP_056056.2 has 2002 amino acids
Query: bMERB_dom [M=134]
Accession: PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-48 148.6 29.0 5.6e-48 148.6 29.0 2.5 2 NP_056056.2
Domain annotation for each sequence (and alignments):
>> NP_056056.2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -10.6 9.1 1 1 77 111 .. 1002 1029 .. 991 1054 .. 0.42
2 ! 148.6 29.0 5.6e-48 5.6e-48 1 134 [] 1854 1988 .. 1854 1988 .. 0.98
Alignments for each domain:
== domain 1 score: -10.6 bits; conditional E-value: 1
bMERB_dom 77 eqelrellekedsekteedkkreeelleelveiVe 111
e+e +e + e++e +e+ ++r ++ +++
NP_056056.2 1002 EEEEEEDYDEEEEESSEAGNQRLQQ-------VMH 1029
3333333333333333333333333.......333 PP
== domain 2 score: 148.6 bits; conditional E-value: 5.6e-48
bMERB_dom 1 iqreleeieeelkeleergvelEkkLR.eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekteed 95
iqr+l+++ee+++ leergv +Ek+LR e g++++ +l++ewf+Lv+ekna+vr+eseL+i+a+e+eLe++q++l+qelre++++ed+ ktee+
NP_056056.2 1854 IQRQLQQVEERQRRLEERGVAVEKALRgEAGMGKKDDPKLMQEWFKLVQEKNAMVRYESELMIFARELELEDRQSRLQQELRERMAVEDHLKTEEE 1949
8**************************988899*************************************************************** PP
bMERB_dom 96 kkreeelleelveiVekRdelvesleedrlreeeedeel 134
++e+++l+e++e+Ve+Rd+lv lee+rlre+eed++l
NP_056056.2 1950 LSEEKQILNEMLEVVEQRDSLVALLEEQRLREREEDKDL 1988
************************************985 PP
Or compare NP_056056.2 to CDD or PaperBLAST