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Align SwissProt::Q8NDI1 to PF12130 (bMERB_dom)

SwissProt::Q8NDI1 has 1231 amino acids

Query:       bMERB_dom  [M=134]
Accession:   PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    9.2e-43  131.7  23.9    9.2e-43  131.7  23.9    4.1  4  SwissProt::Q8NDI1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q8NDI1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   2.0     0.029     0.029      87     124 ..     191     227 ..     167     236 .. 0.80
   2 ?   -1.6   0.3      0.14      0.14      69      87 ..     810     828 ..     803     846 .. 0.50
   3 ?   -2.3   0.8      0.24      0.24      82     106 ..     852     876 ..     850     885 .. 0.59
   4 !  131.7  23.9   9.2e-43   9.2e-43       3     134 .]    1076    1210 ..    1074    1210 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.029
          bMERB_dom  87 edsekteedkkreeelleelveiVekRdelvesleedr 124
                        ed+e  +e++ ++ee  +++ eiV++ ++l + l+ed+
  SwissProt::Q8NDI1 191 EDNEDDDENRVNQEEKAAKITEIVNQLNALSS-LDEDQ 227
                        4677788888899999************9965.55554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.14
          bMERB_dom  69 Leeeqaeleqelrelleke 87 
                        L ++q+el++  r lle+ 
  SwissProt::Q8NDI1 810 LLSRQEELKERARVLLEQA 828
                        4444444444444433332 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.24
          bMERB_dom  82 ellekedsekteedkkreeelleel 106
                        +l +++d+e+  + ++r ++l++e 
  SwissProt::Q8NDI1 852 QLSDQQDEERRRQLRERARQLIAEA 876
                        5555666666666666666666655 PP

  == domain 4  score: 131.7 bits;  conditional E-value: 9.2e-43
          bMERB_dom    3 releeieeelkeleergvelEkkLR...eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekeds 89  
                          el ++e+e+k+++ r++ +Ek+LR   ++ +++eeee++++ewf Lvn+knal+rr ++L++l+ke++Le++++ l++elr +l++ed+
  SwissProt::Q8NDI1 1076 GELAALENEQKQIDTRAALVEKRLRylmDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDW 1165
                         599*************************88999********************************************************* PP

          bMERB_dom   90 ekteedkkreeelleelveiVekRdelvesleedrlreeeedeel 134 
                         +kte++k+re+ ll+elv +V+kRd+lv++l+++++++eeede+l
  SwissProt::Q8NDI1 1166 QKTEAQKRREQLLLDELVALVNKRDALVRDLDAQEKQAEEEDEHL 1210
                         ******************************************985 PP



Or compare SwissProt::Q8NDI1 to CDD or PaperBLAST