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Align SwissProt::Q8NDI1 to PF12130 (DUF3585)

SwissProt::Q8NDI1 has 1231 amino acids

Query:       DUF3585  [M=136]
Accession:   PF12130.8
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.9e-45  140.6  24.1    1.9e-45  140.6  24.1    4.2  4  SwissProt::Q8NDI1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q8NDI1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.3     0.018     0.018      89     125 ..     191     226 ..     169     236 .. 0.80
   2 ?   -3.5   4.4      0.59      0.59      68      90 ..     807     829 ..     802     871 .. 0.66
   3 ?   -1.6   0.2      0.15      0.15      83     108 ..     851     876 ..     849     884 .. 0.67
   4 !  140.6  24.1   1.9e-45   1.9e-45       3     136 .]    1076    1210 ..    1074    1210 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.018
            DUF3585  89 eekeKteedkereeelleelvevVeqRdelvdsleed 125
                        e++e ++e++ ++ee  +++ e+V+q ++l + l+ed
  SwissProt::Q8NDI1 191 EDNEDDDENRVNQEEKAAKITEIVNQLNALSS-LDED 226
                        45666778888899999************976.4444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.59
            DUF3585  68 eqeLedeqadleqelrelmakee 90 
                        +++L  +q++l++  r+l+++  
  SwissProt::Q8NDI1 807 QHRLLSRQEELKERARVLLEQAR 829
                        55566666666666666655543 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.15
            DUF3585  83 relmakeekeKteedkereeelleel 108
                        r+l +++++e+  + +er ++l++e 
  SwissProt::Q8NDI1 851 RQLSDQQDEERRRQLRERARQLIAEA 876
                        56666777777777777777777665 PP

  == domain 4  score: 140.6 bits;  conditional E-value: 1.9e-45
            DUF3585    3 releeieeeqreleergvelEkaLRgeae.esgeeeeeellqewfeLvneknelvrreseLmilareqeLedeqadleqelrelmakeek 91  
                          el ++e+eq++++ r++ +Ek+LR  ++  +++eeee+++qewf Lvn+kn+l+rr ++L +l++e++Le++++ l++elr+++a+e++
  SwissProt::Q8NDI1 1076 GELAALENEQKQIDTRAALVEKRLRYLMDtGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDW 1165
                         699*************************87899********************************************************* PP

            DUF3585   92 eKteedkereeelleelvevVeqRdelvdsleedrlreaeedeel 136 
                         +Kte++k+re++ll+elv +V++Rd+lv++l++++++++eede+l
  SwissProt::Q8NDI1 1166 QKTEAQKRREQLLLDELVALVNKRDALVRDLDAQEKQAEEEDEHL 1210
                         ******************************************985 PP



Or compare SwissProt::Q8NDI1 to CDD or PaperBLAST