SwissProt::Q99MS7 has 1716 amino acids
Query: bMERB_dom [M=134]
Accession: PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-40 124.4 25.4 1.7e-40 124.4 25.4 2.0 2 SwissProt::Q99MS7
Domain annotation for each sequence (and alignments):
>> SwissProt::Q99MS7
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.4 0.0 0.53 0.53 73 89 .. 210 226 .. 205 234 .. 0.83
2 ! 124.4 25.4 1.7e-40 1.7e-40 2 133 .. 1557 1691 .. 1556 1692 .. 0.98
Alignments for each domain:
== domain 1 score: -3.4 bits; conditional E-value: 0.53
bMERB_dom 73 qaeleqelrellekeds 89
q++l++el++l e ed+
SwissProt::Q99MS7 210 QSDLSRELKTLCEEEDE 226
89999999999999886 PP
== domain 2 score: 124.4 bits; conditional E-value: 1.7e-40
bMERB_dom 2 qreleeieeelkeleergvelEkkLR...eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrelleked 88
+el+++e+e+ +++ r++e+Ek+LR es +++ +ee l++ewf+Lvn+knal+rr+++L++l +eq+Le++++ l++elr +l++e+
SwissProt::Q99MS7 1557 CAELQALEQEQGQIDGRAAEVEKQLRslmESGANRLQEEVLIQEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFELLSRELRAMLAIEE 1646
689*************************988999******************************************************** PP
bMERB_dom 89 sekteedkkreeelleelveiVekRdelvesleedrlreeeedee 133
++kt ++++re+ lleelv++V++Rdelv++l+++++ + eede+
SwissProt::Q99MS7 1647 WQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDER 1691
*******************************************97 PP
Or compare SwissProt::Q99MS7 to CDD or PaperBLAST