PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011241983.1 to PF12130 (DUF3585)

XP_011241983.1 has 1257 amino acids

Query:       DUF3585  [M=136]
Accession:   PF12130.8
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-45  139.3  24.1    4.6e-45  139.3  24.1    3.8  3  XP_011241983.1  


Domain annotation for each sequence (and alignments):
>> XP_011241983.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.2     0.019     0.019      89     125 ..     191     226 ..     169     234 .. 0.80
   2 ?   -2.8   2.2      0.36      0.36      11      29 ..     816     834 ..     808     904 .. 0.54
   3 !  139.3  24.1   4.6e-45   4.6e-45       3     136 .]    1102    1236 ..    1100    1236 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.019
         DUF3585  89 eekeKteedkereeelleelvevVeqRdelvdsleed 125
                     e++e ++e++ ++ee  +++ e+V+q ++l + l+ed
  XP_011241983.1 191 EDNEDDDENRVNQEEKAAKITEIVNQLNALSS-LDED 226
                     45666778888899999************975.4444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.36
         DUF3585  11 eqreleergvelEkaLRge 29 
                     +q+el er+ +l ++ R+ 
  XP_011241983.1 816 RQEELKERARVLLEQARRD 834
                     4444444444443333333 PP

  == domain 3  score: 139.3 bits;  conditional E-value: 4.6e-45
         DUF3585    3 releeieeeqreleergvelEkaLRgeae.esgeeeeeellqewfeLvneknelvrreseLmilareqeLedeqadleqelrelmakeekeKt 94  
                       el ++e+eq++++ r++ +Ek+LR  ++  +++eeee+++qewf Lvn+kn+l+rr ++L +l++e++Le++++ l++elr+++a+e+++Kt
  XP_011241983.1 1102 GELAALENEQKQIDTRAALVEKRLRYLMDtGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKT 1194
                      699*************************87899************************************************************ PP

         DUF3585   95 eedkereeelleelvevVeqRdelvdsleedrlreaeedeel 136 
                      e++k+re++ll+elv +V++Rd+lv++l++++++++eede+l
  XP_011241983.1 1195 EAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHL 1236
                      ***************************************985 PP



Or compare XP_011241983.1 to CDD or PaperBLAST