PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001263041.1 to PF12372 (DUF3652)

NP_001263041.1 has 3583 amino acids

Query:       DUF3652  [M=41]
Accession:   PF12372.8
Description: Huntingtin protein region
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-22   65.0   0.8    6.7e-20   57.1   0.1    3.4  3  NP_001263041.1  


Domain annotation for each sequence (and alignments):
>> NP_001263041.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.19      0.19       5      14 ..     837     846 ..     836     848 .. 0.81
   2 !    4.6   0.0    0.0018    0.0018       1      39 [.    1934    1971 ..    1934    1973 .. 0.79
   3 !   57.1   0.1   6.7e-20   6.7e-20       2      41 .]    2718    2759 ..    2717    2759 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.19
         DUF3652   5 iPrIiqLcdg 14 
                      P+I+qL+ +
  NP_001263041.1 837 APKILQLSLE 846
                     5******966 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0018
         DUF3652    1 aiigiPrIiqLcdglmASgqpalr.heipalrpivqDlff 39  
                      ++i+iP+Ii     l A g   +r  +++al+ +  +lff
  NP_001263041.1 1934 QLITIPKIISITNNLLANGS--VRvVALLALKTLSYELFF 1971
                      69************999887..441468888877777777 PP

  == domain 3  score: 57.1 bits;  conditional E-value: 6.7e-20
         DUF3652    2 iigiPrIiqLcdglmASgqpalrheipal.....rpivqDlffyr 41  
                      ++++Pr++   ++l+AS +p+lr+e+++l     r+i+qD++fyr
  NP_001263041.1 2718 LLQQPRVW---RELNASSDPSLRCELLDLldsvaRCILQDTIFYR 2759
                      8*******...*********************************9 PP



Or compare NP_001263041.1 to CDD or PaperBLAST