PaperBLAST – Find papers about a protein or its homologs

 

Align Q59FF4 to PF12372 (Htt_N-HEAT)

Q59FF4 has 1147 amino acids

Query:       Htt_N-HEAT  [M=851]
Accession:   PF12372.12
Description: Huntingtin, N-terminal HEAT
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1099.1   5.6          0 1098.7   5.6    1.1  1  Q59FF4    


Domain annotation for each sequence (and alignments):
>> Q59FF4  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1098.7   5.6         0         0       1     850 [.     154    1029 ..     154    1030 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1098.7 bits;  conditional E-value: 0
  Htt_N-HEAT    1 yanhsDpqlrgvvllllekfikavlsqqvllyerwlqslesiknrkaqdldalvklllkgLkdessgtlrlaisavesClrnLadSkeflqlLqlli 97  
                  y +h Dpq+rg++++l++++i ++ls+++ ++++w+ ++++ ++ ++++l +++ ll k+Lkdess+t++la++av+ C+ +L++S++++++Lql+i
      Q59FF4  154 YIDHGDPQVRGATAILCGTLICSILSRSRFHVGDWMGTIRTLTG-NTFSLADCIPLLRKTLKDESSVTCKLACTAVRNCVMSLCSSSYSELGLQLII 249 
                  679***************************************99.9*************************************************** PP

  Htt_N-HEAT   98 ellalktsaywlvkvellellaklkyvlve..............nitassrlqervldsvliallqdedprvrsaaaaaivkaipkLfyktrs.eed 179 
                  ++l l +s+ywlv++elle+la+++++lv+              ++t+  +lqervl++v+i+ll+dedprvr++aaa +++++pkLfyk+++ ++d
      Q59FF4  250 DVLTLRNSSYWLVRTELLETLAEIDFRLVSfleakaenlhrgahHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQgQAD 346 
                  ************************************************************************************************* PP

  Htt_N-HEAT  180 eitakAkelsekllscltellveleshd..slisaaskayslLakrsnvcrtkdalesslSrivcklselLlvsaskalllgCleallalsleypva 274 
                   ++a+A+++s+ +l+ l++ ++   sh   s+i++++++y lL +      t+ ++e++lSr+++++s++L++s+++al++gC+eal+ ls ++pv+
      Q59FF4  347 PVVAVARDQSSVYLKLLMHETQP-PSHFsvSTITRIYRGYNLLPS-----ITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALCLLSTAFPVC 437 
                  ******************66644.33335799*************.....6888******************************************* PP

  Htt_N-HEAT  275 lyekaWgckvksklkrdasvakdesaqqvelgllslvlsLLsssylnfdltaHldlLilagnLlagaalrnik...lsdsepsk........Wdals 360 
                   ++ +W+c v+      + +a+des++++++g++ ++l+LLss+++++dl+aH+d+LilagnLla++a ++++   +s++e           W+al 
      Q59FF4  438 IWSLGWHCGVP------PLSASDESRKSCTVGMATMILTLLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRsswASEEEANPaatkqeevWPALG 528 
                  **********8......99******************************************************998777765446788999****** PP

  Htt_N-HEAT  361 dtvlvrlaeqllrhvlrllnilaevlddvtpgqatkdalpslqalqvlSplkrlkeeekkekepserlarrqssparngi...............va 442 
                  d+ lv+++eql++h+l+++ni+a+vlddv+pg+a+k+alpsl+++++lSp++r    + kekep+e+ +  + sp++  +               ++
      Q59FF4  529 DRALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRR----KGKEKEPGEQASV-PLSPKKGSEasaasrqsdtsgpvtTS 620 
                  *****************************************************....9********9996.8888777778889999999***999* PP

  Htt_N-HEAT  443 kkeslGsFlhvphylrlyeiLkaaysnYkvtLaggeaedkfaslLlkdLevfsqllelAtlqedgkiaeevLmylkleiqsepkatvrcvqqLLksL 539 
                  k++slGsF+h+p+yl+l+++Lka+++nYkvtL+ +++++kf ++L+++L+v+sq+lelAtlq++gk++ee+L+ylk+++++ep++++ cvqqLLk+L
      Q59FF4  621 KSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTL 717 
                  ************************************************************************************************* PP

  Htt_N-HEAT  540 FgtNlasnls.....pskqearllRealagslaamlsgfyhkifqhPlarvsealrvansss.skvqaeeeae...wlgllkkkslkvarklaavlk 627 
                  FgtNlas+++     psk++ r++R   ++s+   ++g+yh++f++P++++++al  a++s  ++vqae+e++   w+++l+k+s + +++l++v+k
      Q59FF4  718 FGTNLASQFDglssnPSKSQGRAQR-LGSSSV---RPGLYHYCFMAPYTHFTQAL--ADASLrNMVQAEQENDtsgWFDVLQKVSTQLKTNLTSVTK 808 
                  *************************.889999...9*******************..8888889********99*******************9999 PP

  Htt_N-HEAT  628 gvrndektilnyIRlfEklviksLkqYtvtssvelqkqvleLLaqLvqlrvnyclldsdqvfigfvLkqfeyiEeGqvresedlipkiFqFLvlLSy 724 
                   +r+d+++i+n+IRlfE+lvik+LkqYt+t+ v+lqkqvl+LLaqLvqlrvnyclldsdqvfigfvLkqfeyiE+Gq+rese++ip+iF+FLvlLSy
      Q59FF4  809 -NRADKNAIHNHIRLFEPLVIKALKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSY 904 
                  .9*********************************************************************************************** PP

  Htt_N-HEAT  725 eryhskaiigipkiiqlcdglmasgqravthciPAlqPivediFlvRnslkaeeakeleaqrevvlakLlrLleyhevvellilildscrveaneek 821 
                  eryhsk+iigipkiiqlcdg+masg++avth+iPAlqPiv+d+F++R+++ka+++kele+q+evv+++LlrL++yh+v+e++il+l++c++e ne+k
      Q59FF4  905 ERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKE-NEDK 1000
                  ********************************************************************************************.**** PP

  Htt_N-HEAT  822 wkrasrqvadvvLpllaklkisldsthql 850 
                  wkr+srq+ad++Lp+lak+++++ds+++l
      Q59FF4 1001 WKRLSRQIADIILPMLAKQQMHIDSHEAL 1029
                  ***************************97 PP



Or compare Q59FF4 to CDD or PaperBLAST