VIMSS1730120 has 979 amino acids
Query: Cmr2_N [M=111]
Accession: PF12469.12
Description: CRISPR-associated protein Cmr2, N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-42 129.8 0.1 5.9e-41 125.3 0.0 2.5 2 VIMSS1730120
Domain annotation for each sequence (and alignments):
>> VIMSS1730120
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.0 0.016 0.016 38 63 .. 160 185 .. 152 206 .. 0.79
2 ! 125.3 0.0 5.9e-41 5.9e-41 1 110 [. 222 343 .. 222 344 .. 0.91
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.016
Cmr2_N 38 eelveeyGpdvliyPslrgnplvdaw 63
e+++e++Gp++l++P+ + p w
VIMSS1730120 160 EAVAEQFGPESLLMPAETRLPDASIW 185
6799***********98776666655 PP
== domain 2 score: 125.3 bits; conditional E-value: 5.9e-41
Cmr2_N 1 lvvvsigpVqefIaaaRktrDlWagSwllSylawkaieelveeyGpdvliyPslrgnplvdawleeklse.............elktallpnkfvli 84
l+v++++p+qe+I+a+Rk +D+WagSw+l+yl++k+++el+++yGpd+++yPsl+g+pl+d+wl+ek+ e +l ta +pn+++l+
VIMSS1730120 222 LAVFTFSPIQELIKASRKIKDFWAGSWILHYLSAKVCWELAQQYGPDCFLYPSLYGQPLIDHWLLEKYGEqgfsqwvpqpgdrQLLTAGFPNVIMLV 318
679***************************************************************66556666666667777************** PP
Cmr2_N 85 lpkekeaeelaeeiekalkeawkeia 110
lpkek +++ ++++++l +aw++ia
VIMSS1730120 319 LPKEK-VSAAMQSAKNHLLNAWRNIA 343
**776.67888889**********98 PP
Or compare VIMSS1730120 to CDD or PaperBLAST