PaperBLAST – Find papers about a protein or its homologs

 

Align WP_013175521.1 to PF12469 (Cmr2_N)

WP_013175521.1 has 524 amino acids

Query:       Cmr2_N  [M=111]
Accession:   PF12469.12
Description: CRISPR-associated protein Cmr2, N-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-11   30.3   0.0    1.3e-10   27.6   0.0    2.2  2  WP_013175521.1  


Domain annotation for each sequence (and alignments):
>> WP_013175521.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.3e-10   1.3e-10       2      58 ..       5      60 ..       4     104 .. 0.86
   2 ?   -0.4   0.0     0.065     0.065      37      68 ..     186     217 ..     177     270 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-10
          Cmr2_N  2 vvvsigpVqefIaaaRktrDlWagSwllSylawkaieelveeyGpdvliyPslrgnp 58
                     +++igp+  + + aR t+ lWa+S+l+Sy+++ ++++l e +   ++ +P++++n 
  WP_013175521.1  5 FGITIGPIYGTMSLARDTGGLWAASYLFSYISHCLVQRLRE-FPRVSVFSPNPEANR 60
                    579******************************99999874.445577777777764 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.065
          Cmr2_N  37 ieelveeyGpdvliyPslrgnplvdawleekl 68 
                      + ++ ++G   +++Psl++   ++++ ++++
  WP_013175521.1 186 SRMFAGAFGVGKFVFPSLTDIAKTETTRRKEK 217
                     556777888889999*9999887777777632 PP



Or compare WP_013175521.1 to CDD or PaperBLAST