PaperBLAST – Find papers about a protein or its homologs

 

Align WP_015580868.1 to PF12469 (Cmr2_N)

WP_015580868.1 has 825 amino acids

Query:       Cmr2_N  [M=111]
Accession:   PF12469.12
Description: CRISPR-associated protein Cmr2, N-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-27   79.9   0.1    1.8e-26   78.7   0.1    1.6  1  WP_015580868.1  


Domain annotation for each sequence (and alignments):
>> WP_015580868.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.1   1.8e-26   1.8e-26       1     110 [.     204     320 ..     204     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 1.8e-26
          Cmr2_N   1 lvvvsigpVqefIaaaRktrDlWagSwllSylawkaieelveeyGpdvliyPslrgnplvdawlee....klse............elktallpn 79 
                     lv+++++ +q++I++aRk+ D+W gS+llS+l+++++e+l+++yG d++++P +  np++ + l+     +  +            e++++l+p+
  WP_015580868.1 204 LVKIDLPAIQQIISKARKAWDFWGGSYLLSWLTYETVEPLIQKYGVDIVLSPFMGLNPFFVSRLNLpkkiE--DentywefndlmfEPTQPLMPA 296
                     799*********************************************************99998555551..2455666666888********* PP

          Cmr2_N  80 kfvlilpkekeaeelaeeiekalkeawkeia 110
                     ++++ lp+ +       ++++ +++aw++i+
  WP_015580868.1 297 TVLMALPEYE-------NLKDLYEKAWEKIV 320
                     *******665.......45556666666665 PP



Or compare WP_015580868.1 to CDD or PaperBLAST