PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001019969.2 to PF12478 (DUF3697)

NP_001019969.2 has 1105 amino acids

Query:       DUF3697  [M=35]
Accession:   PF12478.8
Description: Ubiquitin-associated protein 2
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-19   56.3   0.2    3.4e-19   55.0   0.2    1.7  1  NP_001019969.2  


Domain annotation for each sequence (and alignments):
>> NP_001019969.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.2   3.4e-19   3.4e-19       3      35 .]     516     546 ..     515     546 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 3.4e-19
         DUF3697   3 SkIPasAVEMPgdslnsissLDVQFGaldFGse 35 
                     SkIPa AVEMPg++  +is+L++QFGal+FGse
  NP_001019969.2 516 SKIPALAVEMPGSA--DISGLNLQFGALQFGSE 546
                     9************9..****************8 PP



Or compare NP_001019969.2 to CDD or PaperBLAST