PaperBLAST – Find papers about a protein or its homologs

 

Align NP_060919.3 to PF12478 (DUF3697)

NP_060919.3 has 1119 amino acids

Query:       DUF3697  [M=35]
Accession:   PF12478.8
Description: Ubiquitin-associated protein 2
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-21   61.9   0.5    7.5e-21   60.3   0.5    1.9  1  NP_060919.3  


Domain annotation for each sequence (and alignments):
>> NP_060919.3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.5   7.5e-21   7.5e-21       1      35 []     512     544 ..     512     544 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 7.5e-21
      DUF3697   1 PpSkIPasAVEMPgdslnsissLDVQFGaldFGse 35 
                  P+SkIPasAVEMPg++  ++ +L+VQFGal+FGse
  NP_060919.3 512 PASKIPASAVEMPGSA--DVTGLNVQFGALEFGSE 544
                  9**************9..****************8 PP



Or compare NP_060919.3 to CDD or PaperBLAST