PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS269909 to PF13274 (SocA_Panacea)

VIMSS269909 has 174 amino acids

Query:       SocA_Panacea  [M=114]
Accession:   PF13274.10
Description: Antitoxin SocA-like, Panacea domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.2e-25   74.3   0.1    1.3e-24   73.7   0.1    1.3  1  VIMSS269909  


Domain annotation for each sequence (and alignments):
>> VIMSS269909  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.1   1.3e-24   1.3e-24       1     114 []      26     139 ..      26     139 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1.3e-24
  SocA_Panacea   1 LqKllYladalslkkygkpltgdeyeawkyGPVvpevydeikgkkgkpieeseeefedeklekeekeeveeeeegeenelseeekeildeviekykd 97 
                   LqKllY+++  +  ++g pl+++++e+wkyGPVvp+vy+e+k +++ +i + e   e  +++  +++e ++ e+ e++  + e+ ++++  ++ ++ 
   VIMSS269909  26 LQKLLYFVNVRNILENGAPLFEESMEKWKYGPVVPDVYHEYKRFGAFSISTDEMIMEYVEFSVSPFGELSDLEITEYDSQKVENTQLIENTVDALHG 122
                   9**********************************************9988888888889****************999****************** PP

  SocA_Panacea  98 lsakeLselthkekaWk 114
                   + ++eL+++th++++Wk
   VIMSS269909 123 FGPFELVDITHDHTPWK 139
                   ****************7 PP



Or compare VIMSS269909 to CDD or PaperBLAST