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Align VIMSS144617 to PF13349 (DUF4097)

VIMSS144617 has 309 amino acids

Query:       DUF4097  [M=252]
Accession:   PF13349.6
Description: Putative adhesin
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-15   43.8  35.3    6.7e-11   28.1  12.1    3.2  3  VIMSS144617  


Domain annotation for each sequence (and alignments):
>> VIMSS144617  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1  12.1   6.7e-11   6.7e-11     110     216 ..      13     113 ..       3     114 .. 0.88
   2 !   28.0  13.0   7.3e-11   7.3e-11     111     192 ..      88     166 ..      87     197 .. 0.87
   3 !    2.8   0.8    0.0035    0.0035      40      85 ..     230     271 ..     190     301 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 6.7e-11
      DUF4097 110 sssGdltlsnvsaktltvksesGdvtiegseakklklqltsGdieleslsletldltsssGdltlsntklegsltitassGdvdlslpeekkaavdas 207
                  +s+G+ + + ++  t+ v+s s d++i++ + k +++ + sGdi++++ s+  ++++s sGd+t++n  +    +it+ sGdv++     ++++ +++
  VIMSS144617  13 HSAGFNNSNSIQKYTGAVSSISDDLRINNEKCK-SDIGTISGDIKINRHSAVYGNVNSVSGDITVKNSIVD--KDITTVSGDVNAVN---STIGKNIK 104
                  4679999999999****************9986.79******************************76555..7999*******998...59****** PP

      DUF4097 208 sesGdvslp 216
                  + sG++++ 
  VIMSS144617 105 TVSGSIEVE 113
                  *****9875 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 7.3e-11
      DUF4097 111 ssGdltlsnvsaktltvksesGdvtiegseakklklqltsGdieleslsletldltsssGdltlsntklegsltitassGdv 192
                   sGd++  n ++ + ++k+ sG +++e+s+  + +l++tsG+i++++++++ +++ ++sG + ++  ++ gs+t++a s  +
  VIMSS144617  88 VSGDVNAVNSTIGK-NIKTVSGSIEVEQSTV-SGNLETTSGGIDIDTTKIN-GNVHTTSGSISMNDSTIDGSVTCKAGSVTI 166
                  68999999999886.8************987.68*****************.************************998543 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.0035
      DUF4097  40 etggtLsitqkekngvstgfikelssgekskitiylPkktkledlq 85 
                  +t+g++ +++++ +++      ++ s++ +++ti + k+ +++d+ 
  VIMSS144617 230 ITNGKVFVNEQRVGHTAS----QSTSKKVEEVTINIAKNASVNDIV 271
                  444444444444444433....467777788888888888777765 PP



Or compare VIMSS144617 to CDD or PaperBLAST