PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS202929 to PF13349 (DUF4097)

VIMSS202929 has 318 amino acids

Query:       DUF4097  [M=252]
Accession:   PF13349.6
Description: Putative adhesin
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-19   55.1  18.6    6.2e-17   47.8  14.1    2.1  2  VIMSS202929  


Domain annotation for each sequence (and alignments):
>> VIMSS202929  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8  14.1   6.2e-17   6.2e-17       4     217 ..      42     235 ..      40     238 .. 0.91
   2 !   18.7   1.0   4.8e-08   4.8e-08     159     251 ..     218     315 ..     215     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 6.2e-17
      DUF4097   4 ldissesadvtikesddekitveystakklkkqkveetggtLsitqkekngvstgfikelssgekskitiylPkktkledlqvkassGdlsvekatkl 101
                  l+i+++  +v+i+  d+++++v+ + ++  +  + e++g++L+i++k  +++  g     s ++ sk+ti++Pk+    +l++++ s +l++++    
  VIMSS202929  42 LQIKVQRGEVQIQSWDKNEVSVTGTLDELSEGFVFEQKGNNLNIEDKMPRHYN-G-----SDNNGSKLTIKVPKTV---KLSADTVSANLQMSQ---- 126
                  78999999*******************999999999**********9988884.4.....688999**********...************994.... PP

      DUF4097 102 kaetlelksssGdltlsnvsaktltvksesGdvtiegseakklklqltsGdieleslsletldltsssGdltlsntklegsltitassGdvdlslpee 199
                  +  +lel++ sG++t  n    + t+++ sG++ ++g++  k+ l++ sG i+  + ++e ++ ++ sGdl+ +  +l++++++++ sG+v+  ++  
  VIMSS202929 127 TQGELELNTVSGNITADNLG-GSPTLHTVSGNIITKGLTG-KVMLDTVSGEIKDADSKGE-IKYRLVSGDLNSQ--TLADKVKVEQVSGEVKGDFK-- 217
                  8899**************96.5679********9999875.688****************.*********9765..9999***************9.. PP

      DUF4097 200 kkaavdassesGdvslpk 217
                  ++ +v++++ sGd +++ 
  VIMSS202929 218 TAKEVNVRTVSGDTQVSL 235
                  899999999999988765 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 4.8e-08
      DUF4097 159 sletldltsssGdltlsntklegsltitassGdvdlslpeekkaavdass.esGdvslpk....kreeeekesnsisaseknakkkvsvstssGDitv 251
                  +++++++++ sGd ++s +k  ++  +++ sGd  +s+++  +a++++    sG+++ +      ++++  +++s s + +++++ v+ +t sG+  +
  VIMSS202929 218 TAKEVNVRTVSGDTQVSLAKTFDKANLESVSGDMMVSFTDTPDASFELNGgPSGKIKNGLsqdmPQKQKYVQNESLSFQTGSGSASVKMDTISGNLIL 315
                  57889**********************************99******98637*****99999988888899999999999**************9876 PP



Or compare VIMSS202929 to CDD or PaperBLAST