Q9CV28 has 444 amino acids
Query: MINDY-3_4_CD [M=344]
Accession: PF13898.10
Description: Deubiquitinating enzyme MINDY-3/4, conserved domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.9e-59 185.2 0.0 2e-55 174.1 0.0 2.1 2 Q9CV28
Domain annotation for each sequence (and alignments):
>> Q9CV28
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 174.1 0.0 2e-55 2e-55 16 280 .. 29 300 .. 20 315 .. 0.85
2 ! 9.0 0.0 3.4e-05 3.4e-05 285 343 .. 377 436 .. 371 437 .. 0.83
Alignments for each domain:
== domain 1 score: 174.1 bits; conditional E-value: 2e-55
MINDY-3_4_CD 16 WkkqgftfretekelaYgLkqkkggprgvlavvQafvlkkLLfekkkkksasleellkpskeeqekaLvaalaeiLwrageek.............. 98
W++ gf+f+e+ + +L+q +ggp++v+a vQaf+lkkLLf+++k ++ + s+eeq++ L+ l +i+ a +++
Q9CV28 29 WTQ-GFVFSES-E--GSALEQFEGGPCAVIAPVQAFLLKKLLFSSEK------SSWRDCSEEEQKELLCHTLCDIVESAYDSSgsyclvswlrgrtp 115
776.9****98.3..348**************************953......345567999*****************999988777777777777 PP
MINDY-3_4_CD 99 ....kavv.......alpteessflpasdykqdgltekltlfevtsledleeflkehieqFeeekgsGvilllySailsrgiekvredldsptsall 184
+ + + + e+ss+l+ ++ +++ ++ +++++++l++++ ++ +++ ++ Gv+l+lyS++l++gie++++ +++ ++ l+
Q9CV28 116 eeaaR--IsgspaqsSCQVEHSSALAVEELGFERFHALIQKRSFRTVSELKDAVLDQYSMWGNKF--GVLLFLYSVLLTKGIENIKNSIEDANEPLI 208
76540..2544444455555556777778888888888999999999999999998888776644..9***************************** PP
MINDY-3_4_CD 185 g.eegsctQelvnLlLtGrAssnvfngvveldsedklatllkGilsrsdiGlLelfehlkllqvGsrLKtPklPiWvvcseshysVlFstnrellsd 280
+ g+ +Q l+nLlLtG A+snv++g+ e+ l Gi++++ +G+L+l+e+l++++vGs+LK+Pk+PiW+v se h +V F+++ l+
Q9CV28 209 DpVYGHGSQSLINLLLTGHAVSNVWDGDRECSGM-----QLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAP 300
*988899999******************999743.....599************************************************9998864 PP
== domain 2 score: 9.0 bits; conditional E-value: 3.4e-05
MINDY-3_4_CD 285 rrfdLyYydglasqq.eeirltvdtrakkeeakekseeklipplellirTKWkeaavdwn 343
++f +y+y+gl++ + +e + v+ +a ++ ++ +p+ ++++TKW+ +++ w+
Q9CV28 377 ESFTVYHYNGLKQSNyNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWT 436
5799*****987655156679999888877788888888889***********9999995 PP
Or compare Q9CV28 to CDD or PaperBLAST