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Align NP_001322622.1 to PF14309 (DUF4378)

NP_001322622.1 has 978 amino acids

Query:       DUF4378  [M=166]
Accession:   PF14309.10
Description: Domain of unknown function (DUF4378)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-40  125.3   3.3    1.6e-40  125.3   3.3    3.0  3  NP_001322622.1  


Domain annotation for each sequence (and alignments):
>> NP_001322622.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.012     0.012      70     116 ..      82     123 ..      60     162 .. 0.69
   2 ?   -2.7   0.1      0.37      0.37      90     122 ..     729     761 ..     708     770 .. 0.61
   3 !  125.3   3.3   1.6e-40   1.6e-40       1     166 []     780     955 ..     780     955 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.012
         DUF4378  70 iLveilelfkrsfsyppskvssassrrrpkklsgeelleevwseirs 116
                      L+e+l++    +++ +s+vs +ss+++  ++ ++e+ +ev+ ei+ 
  NP_001322622.1  82 GLSEKLTR---LSTE-CSRVSFSSSCSSS-SPLSSEVNREVQPEISA 123
                     46777653...3333.3355555555333.37777888888888874 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.37
         DUF4378  90 ssassrrrpkklsgeelleevwseirswlspes 122
                     ++++s + +++ ++ + +e++ ++++++ s+ +
  NP_001322622.1 729 KTTTSFSPEMNRKKLQNVEHLVQKLKRLNSSHD 761
                     344455555555566668888888887666653 PP

  == domain 3  score: 125.3 bits;  conditional E-value: 1.6e-40
         DUF4378   1 eleYvrdiLeasglllkd..sdellsrwhssespldpslfeeleekkgsaseeetresrserklLFDlvneiLveilelfkrsfsyppskvssas 93 
                     +++Y+++iL+asglll+d  s     + h s++p++p+lf  +e++kg++s++   +++++rkl+FD+vne+L ++l+ f +s+ +p++k  +a+
  NP_001322622.1 780 DHRYISEILLASGLLLRDlgSGLTTFQLHPSGHPINPELFLVIEQTKGCSSSS---NEKINRKLVFDAVNEMLGKKLA-FVESYVDPWMK--QAK 868
                     79****************874445556778888**************975444...59******************99.54555555555..555 PP

         DUF4378  94 srrrpkklsgeelleevwseirswlspe..........selvlde...........lvdkdlssregkwldledeveeigleierlIledLveE 166
                      r  +k ls ++ll+e++sei+ + +++          +     e           ++d+d++ +++kw+d++d +++++l++erl+++dLv+E
  NP_001322622.1 869 AR--KKVLSAQNLLKELCSEIEILQKQAkkrsenllllE-----EeeeeeedflkcILDEDMAIQSEKWTDFDDAIPGLVLDMERLLFKDLVKE 955
                     54..7789**************65555566666444441.....344444578888************************************98 PP



Or compare NP_001322622.1 to CDD or PaperBLAST