PaperBLAST – Find papers about a protein or its homologs

 

Align NP_197062.1 to PF14309 (DUF4378)

NP_197062.1 has 927 amino acids

Query:       DUF4378  [M=166]
Accession:   PF14309.10
Description: Domain of unknown function (DUF4378)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-42  132.5   2.7    1.3e-42  132.2   0.9    2.1  2  NP_197062.1  


Domain annotation for each sequence (and alignments):
>> NP_197062.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.2       0.2      64     122 ..     306     363 ..     293     386 .. 0.69
   2 !  132.2   0.9   1.3e-42   1.3e-42       1     166 []     721     904 ..     721     904 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.2
      DUF4378  64 FDlvneiLveilelfkrsfsyppskvssassrrrpkklsgeelleevwseirswlspe...s 122
                  FD++ +++  ++       ++p+ +v  a+++ + ++ +   +  e++++++++ +++   +
  NP_197062.1 306 FDSIKKMMPAKFP----MKASPWAQVDGAKNQVKIPDATTLTVYGEIQKRLSQLEFKKsekD 363
                  8888888888854....456778788778777766666666677888888887655554332 PP

  == domain 2  score: 132.2 bits;  conditional E-value: 1.3e-42
      DUF4378   1 eleYvrdiLeasglllkd.sdellsrwhssespldpslfeeleekkgsa...............seeetresrserklLFDlvneiLveilelfkrsf 82 
                  +++Y+++i++asgll++   +++  + h  + p++pslf  le++k+s+               +++ +  +rs+rkl+FD++neiL+++++  + ++
  NP_197062.1 721 DHKYISEIMLASGLLRDIdYSMISIQLHQAHLPINPSLFFVLEQNKTSNvslqdnkhkgrgfgqQQTVNLVERSKRKLIFDTINEILAHRFAA-EGCT 817
                  79************977533344444444455**************999***************99999*********************995.5699 PP

      DUF4378  83 syppskvssassrrrpkklsgeelleevwseirswlspeselvlde....lvdkdlssregkwldledeveeigleierlIledLveE 166
                  ++p+  +s +++r+++k+++geell+ ++sei+++ + +s+++lde    l+++dl+s++++w ++e e+++++l+ierlI++dL+ E
  NP_197062.1 818 KQPSITLSISTQRTHEKSSRGEELLQTLCSEIDRLQD-NSKCILDEddedLIWEDLQSHGMNWKEIEGETPGLVLDIERLIFKDLIGE 904
                  9*********************************444.4699999999**************************************98 PP



Or compare NP_197062.1 to CDD or PaperBLAST