PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10092667 to PF14309 (DUF4378)

VIMSS10092667 has 801 amino acids

Query:       DUF4378  [M=165]
Accession:   PF14309.6
Description: Domain of unknown function (DUF4378)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-30   90.8   2.9    6.6e-30   90.8   2.9    2.2  2  VIMSS10092667  


Domain annotation for each sequence (and alignments):
>> VIMSS10092667  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       0.3       0.3      67      76 ..     391     400 ..     347     431 .. 0.55
   2 !   90.8   2.9   6.6e-30   6.6e-30       1     165 []     646     792 ..     646     792 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.3
        DUF4378  67 vneiLaeila 76 
                    vn++L+e  +
  VIMSS10092667 391 VNKVLVENGT 400
                    5555555533 PP

  == domain 2  score: 90.8 bits;  conditional E-value: 6.6e-30
        DUF4378   1 dfeYireiLlasglllkdsdellsrwhssespidpslfeeleekkssssekkrreerserklLFDlvneiLaeilalelkrslaepsskvssakkr 96 
                    ++eYi+ei+ + +l+ k+    +s    ++ ++  slf+e e k+       + + ++erk LFDlvn+ L  ++++++  +++ +  k+  +   
  VIMSS10092667 646 ELEYITEIIASGQLMIKE----FSLGMATD-ILPLSLFDETEGKR-------DARGKIERKTLFDLVNQWLTLKCEQMFMGTCKGVLGKQDIFL-- 727
                    689***********9998....66666655.***********998.......569*******************99776555555554444443.. PP

        DUF4378  97 rkkklsgeqLleevwseieewlsseelvvdelvdkdlsrrsgkwldledevdeigleierlilkdLveE 165
                     ++    e L+++v +e + +++++e+++delvd+d+s+ +gkwld+ +e++e g+eie++i+++Lv++
  VIMSS10092667 728 -ER---REILADQVLKEAQGLKKMREMMMDELVDNDMSSCEGKWLDYMRETYEEGIEIEEEIVSELVDD 792
                    .33...799**********************************************************96 PP



Or compare VIMSS10092667 to CDD or PaperBLAST