PaperBLAST – Find papers about a protein or its homologs

 

Align XP_030107200.1 to PF15735 (DUF4683)

XP_030107200.1 has 1515 amino acids

Query:       DUF4683  [M=411]
Accession:   PF15735.9
Description: Domain of unknown function (DUF4683)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.9e-128  414.0  21.4   5.9e-128  414.0  21.4    3.5  4  XP_030107200.1  


Domain annotation for each sequence (and alignments):
>> XP_030107200.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.0  21.4  5.9e-128  5.9e-128       1     410 [.     284     689 ..     284     690 .. 0.91
   2 ?   -2.8   3.1      0.21      0.21      81     156 ..     721     801 ..     708     843 .. 0.54
   3 ?   -3.2   2.0      0.28      0.28      78     124 ..    1187    1204 ..    1151    1261 .. 0.50
   4 ?   -4.1   2.2      0.54      0.54     120     213 ..    1385    1480 ..    1342    1496 .. 0.49

  Alignments for each domain:
  == domain 1  score: 414.0 bits;  conditional E-value: 5.9e-128
         DUF4683   1 elsseedvdtvvedddestdesdlgkLkiRYEefqenkaektsls.qqeahykFFPSVvlsnClsrrsalkklvdvtyklqqs.kkesrlklkkk 93 
                     +l+seedv+++++dddest++sd+++LkiRYE+fq+n+++kt+l+ q++a+++FFPSV +++C++r s +  + + +++l+q+  ++++++++++
  XP_030107200.1 284 NLFSEEDVENYMFDDDESTLGSDVCSLKIRYESFQDNVRDKTTLLmQEDAQFNFFPSV-FTTCPKRES-KSGILKQSSDLSQFkVPDVSIIWGEE 376
                     689****************************************988************.*******33.333445689*****999********* PP

         DUF4683  94 kknlaekkekee.aedkast..kekayiqknaln.ksisekeevlskdvkvakeaseekalidsansasvefedds...eesedalveikdis.. 179
                     +knl++kk+kee  edk+ +  +ek + +k+aln k++   e++++k+     +a++ ++++     +s +f+dds   e s+da++eikd+s  
  XP_030107200.1 377 DKNLDKKKGKEEvHEDKSIEtkDEKDNGEKPALNnKPCGGLEVEQFKN----LKADQLTNSL----ETSGNFSDDSsfiEVSYDAMGEIKDCSry 463
                     ************66666655668999******9736899999999999....3333333333....4699*****99****************66 PP

         DUF4683 180 aklstdksssligskYtLRaKRKvnyete.....DsessekiqnkkeslpkkrkeeedldgskkskKrrKvskkePPviiKYiiiNRFkGrKnmL 269
                     ++++t+++ss+++++Y+LRaKRKv+y+++     Ds+++ek++++ke+ p ++kee+d+++++  kKrrKv++kePPviiKYiiiNRFkG+KnmL
  XP_030107200.1 464 MARDTNSGSSSSQQNYGLRAKRKVRYSEDylydvDSLEGEKVNERKEWPPGGSKEEDDDEWCP--KKRRKVTRKEPPVIIKYIIINRFKGEKNML 556
                     7789999********************************************************..****************************** PP

         DUF4683 270 VKlgkvdssEesVtLteeklekYkKLAPLKdFWpkvpdsr..atkypvysLtpKks............qkrKaKvkstkkkrikklkniesknik 350
                     VKl+kvd+sE++V+L+e++l+kY KL PLK+FW+k+++++  +t++++ +L++K+s            ++rK+K+k ++++ri++++++e++ ++
  XP_030107200.1 557 VKLSKVDASETTVNLSENQLSKYAKLSPLKGFWQKKKKQKnsNTDSVKTPLCQKQSfepgsfevsflpPARKRKSKLGNRHRIQRIQSVETSASS 651
                     ***********************************99988779**************************************************** PP

         DUF4683 351 rtlsfrkrssailsppqpsysaeaeDcdlnysdvmsklGflserslspvelspPrCwsps 410
                     +++sf      +++++q++  +++eD+ +               +++++ l+ P+C+++s
  XP_030107200.1 652 KQVSF------CSDQKQAC--NRKEDGVK--------------GTPKSALLTDPSCANGS 689
                     ****8......9******9..59999876..............56666666666666665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.21
         DUF4683  81 qskkesrlklkkkkknlaek.....kekeeaedkast..kekayiqknalnksisekeevlskdvkvakeaseekalidsans 156
                     ++k+e rlk kk k + ++k        +e  d++s+   +++ + +++ ++ +se  e++ k+ +    +  ++++++san+
  XP_030107200.1 721 KFKSEARLKSKKIKAGQENKpvvqmSPVSE--DTSSKanLKNEVTPGTSNSSHMSEFHETKVKNSTFLPTTCSSEMPLSSANV 801
                     445555555555444433332210033333..322221123333334444444555555555553333344555666666665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.28
         DUF4683   78 klqqskkesrlklkkkkknlaekkekeeaedkastkekayiqknaln 124 
                       ++ s+k+sr k                              ++a+n
  XP_030107200.1 1187 SQSSSQKNSRKK-----------------------------SPKASN 1204
                      111111111111.............................111111 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 0.54
         DUF4683  120 knalnksisekeevlskdvkvakeaseekalidsansasvefeddseesedalveikdisaklstdk..sssligskY.tLRaKRKvnyeteD 209 
                      + a++ +  + + v +++ k a + + +  +  s++   + f d+  +  ++l+++    +kl ++k  s +l ++kY + R  R    ++e 
  XP_030107200.1 1385 SGATK-NHRSVKAVSKSNGKAAIGEPGHADMPGSSEDSRSAFFDKKYSNVNTLGNNGPTHKKLYRHKssSKGLRDEKYkGKRVEREQAHKDEA 1476
                      22332.222222222222233333333333333333333444444444444445555544444333300345666666445666666666665 PP

         DUF4683  210 sess 213 
                      +  s
  XP_030107200.1 1477 GTTS 1480
                      5544 PP



Or compare XP_030107200.1 to CDD or PaperBLAST