PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::F4I9T0 to PF15787 (DUF4704)

SwissProt::F4I9T0 has 2604 amino acids

Query:       DUF4704  [M=279]
Accession:   PF15787.5
Description: Domain of unknown function (DUF4704)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.7e-81  259.6   1.0    1.7e-81  259.6   1.0    2.5  2  SwissProt::F4I9T0  


Domain annotation for each sequence (and alignments):
>> SwissProt::F4I9T0  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.8   1.0    0.0064    0.0064      50     112 ..     250     314 ..     189     419 .. 0.59
   2 !  259.6   1.0   1.7e-81   1.7e-81       2     278 ..     698     970 ..     697     971 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.0064
            DUF4704  50 dseadpslcatllsliaelleasstnqqql..vqtkGflvlaflLqkvspkhLtrevleallsla 112
                        d+ + ++l+ ++l+ +++ll+++ t++  +  ++ kG   l  lL +  + + t+++l+all+++
  SwissProt::F4I9T0 250 DEANGEKLVLNVLQTLTSLLANNDTSKFAFkaLAGKGYQTLQSLLLDFFQWKPTQRLLDALLDML 314
                        23333444444444444444444444332211334444444444444444444444444444444 PP

  == domain 2  score: 259.6 bits;  conditional E-value: 1.7e-81
            DUF4704   2 phAlmlggvkavvthsihsalesiGGiqvLfPLfsqldlpe..kkeaevsdseadpslcatllsliaelleasstnqqqlvqtkGflvlafl 91 
                        ++A ++ g+++++++ ++++++++GGi+v+fPL++q+d++e  + ++e+s+  ++++++a++++lia++l+++++nqqq++   Gf +l+fl
  SwissProt::F4I9T0 698 FEADIMVGTQLCSRRLLQQIIYCVGGISVFFPLITQSDRCEseTLNEETSAMPTKERMTAEVIELIASVLDENPANQQQMHLLAGFPILGFL 789
                        689**************************************7767788888999************************************** PP

            DUF4704  92 LqkvspkhLtrevleallslakvlkelnssaskvLlrdlldkvlfnpklWiyadveVQkkLyqfLatefledesilknvrrvstvlrlldtl 183
                        Lq+++pk+L++e+l++l++l++v++  +s+++++L++d+++++++np++W++a ++VQ++Ly+fL++++ +d ++l ++   ++++r++d++
  SwissProt::F4I9T0 790 LQSIQPKQLNLETLSSLKHLFNVIS--SSGFAEQLVEDAISSIFLNPHIWLHAAYNVQRELYMFLIQQLDNDPRLLGSL---CRLPRVIDIV 876
                        *************************..99**********************************************9999...********** PP

            DUF4704 184 kyyYwvvnprsrsgiesksldg......erpsqeeilklRallLllikqlvlkgsgisedelqallnylltvhedenledvLelilrllveh 269
                         ++Yw   +++r++  sk l++      erps++ei+k+R llL+l +++++  ++is+ +++al ++++t+++ +++edvL++++r++++ 
  SwissProt::F4I9T0 877 WNFYW---ESERYCKGSKPLMHptrtiaERPSRDEIHKIRLLLLSLGEMSLR--HNISSGDVKALTAFFETCQDVACIEDVLHMVIRAISQ- 962
                        *****...77777778888888889999************************..*************************************. PP

            DUF4704 270 pasmlpafd 278
                         +s+l +f 
  SwissProt::F4I9T0 963 -TSVLVSFL 970
                        .88887775 PP



Or compare SwissProt::F4I9T0 to CDD or PaperBLAST