PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::F4JD14 to PF15787 (DUF4704)

SwissProt::F4JD14 has 1941 amino acids

Query:       DUF4704  [M=279]
Accession:   PF15787.5
Description: Domain of unknown function (DUF4704)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    4.3e-43  133.6   0.1    9.4e-43  132.5   0.1    1.5  1  SwissProt::F4JD14  


Domain annotation for each sequence (and alignments):
>> SwissProt::F4JD14  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.1   9.4e-43   9.4e-43      28     278 ..     321     574 ..     310     575 .. 0.90

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 9.4e-43
            DUF4704  28 iqvLfPLfsqldlpe...kkeaevsdseadpslcatllsliaelleasstnqqqlvqtkGflvlaflLqkvspkhLtr..........evle 106
                         + L+PL   + +++     + +v++s +++sl+a ++++i + + +++ n+++l +t+G ++la++L ++  +  +           e+++
  SwissProt::F4JD14 321 PMSLLPLTVSSVHKDnlePCSRNVPSSLTTYSLAAPIFRMI-SFAIKHPGNNEELSRTRGPEILATVLGYLLHSLASFdikhdrvgdeELVA 411
                        5778999866655555547788999****************.9******************999888877766533334466999999**** PP

            DUF4704 107 allslakvlkelnssaskvLlrdlldkvlfnpklWiyadveVQkkLyqfLatefledesilknvrrvstvlrlldtlkyyYwvvnprsrsgi 198
                        a++sl++++k     ++++L  +l+  +l++ k+W+ +++ +QkkL+++L ++++++++ ++n+    +++ lld +++y+w    +++  +
  SwissProt::F4JD14 412 AIVSLCQSQK-----INHALKVQLFCTLLLDLKIWSVCSYRLQKKLLSSLQDMVFTEATAMRNA---DAIQVLLDGCRRYFW--TIQEKDSV 493
                        **********.....899******************************************9999...***************..67777788 PP

            DUF4704 199 esksldgerpsqeeilklRallLllikqlvl.kgsgisedelqallnylltvhedenledvLelilrllvehpasmlpafd 278
                        ++ sldg+  +  e+++l+++lL++i+ l+     + ++d+l+ ll ++ +  +++++++vL+l+ rl+v+++a+ +++f+
  SwissProt::F4JD14 494 NTFSLDGDARQVGEVNALVDELLVIIELLMGaASPSFAADDLHRLLGFIIESPQPNQVARVLHLMFRLVVQPNAAKAQTFA 574
                        999999999*********************95667899*************************************999997 PP



Or compare SwissProt::F4JD14 to CDD or PaperBLAST