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Align NP_001309866.1 to PF16332 (DUF4962)

NP_001309866.1 has 958 amino acids

Query:       DUF4962  [M=476]
Accession:   PF16332.5
Description: Domain of unknown function (DUF4962)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-12   31.2   4.6    4.4e-12   31.2   4.6    2.2  3  NP_001309866.1  


Domain annotation for each sequence (and alignments):
>> NP_001309866.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0     0.068     0.068     131     177 ..      37      85 ..      25      92 .. 0.77
   2 !   31.2   4.6   4.4e-12   4.4e-12     253     417 ..     148     317 ..     119     355 .. 0.80
   3 ?   -1.6   0.1      0.04      0.04     223     248 ..     778     803 ..     730     840 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.068
         DUF4962 131 aklkkeHPrvlllkkewedfikknkdnpea..kaylekaekllkkplkk 177
                     + + ++HP ++  ++e  ++  + ++++e+    + e  +++l++pl+ 
  NP_001309866.1  37 NANYDSHPMLYFSRAEVAELQLRAASSHEHiaARLTEAVHTMLSSPLEY 85 
                     456678**********999999988888862155677778888999875 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 4.4e-12
         DUF4962 253 DFnaatllsllalaYDsfYdllseeekkllkkaikergkkiye.efvnrlenhiadnHvWqmtlRiltlaalav.vgelpeAdkWldyvYevWla 345
                     +   a  l   a+aYD  Y++ls++++++++++i + +  +ye ++      +   nH     +  lt + + +  g l+eA  W++ v  +   
  NP_001309866.1 148 EVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYEtSYRRGWGFQYLHNHQPTNCMALLTGSLVLMnQGYLQEAYLWTKQVLTIMEK 242
                     55567788899*******************************84689999********99999988886654442578***************** PP

         DUF4962 346 RfPgL..nkDGgWHngdsYfkvnlrtlievpalysklsGvdfFsdpWyqnnalyvlyqq.ppfsksggnGdshen 417
                      +  L   +DG+ ++g +Y +  +r+l +   l ++   +++F +pW++    ++  +  p f   ++  ds  n
  NP_001309866.1 243 SLVLLreVTDGSLYEGVAYGSYTTRSLFQYMFLVQRHFNINHFGHPWLKQHFAFMYRTIlPGFQRTVAIADSNYN 317
                     **9998779****************************************99888654432445555565555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.04
         DUF4962 223 lLtkDkkyakeaikrllellswdksk 248
                     l   Dk+ ++eai+r++ + + ++++
  NP_001309866.1 778 LRFSDKRQTEEAIDRIFAISQQQQQQ 803
                     44579999999999999999887433 PP



Or compare NP_001309866.1 to CDD or PaperBLAST