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Align NP_001309866.1 to PF16332 (DUF4962)

NP_001309866.1 has 958 amino acids

Query:       DUF4962  [M=476]
Accession:   PF16332.9
Description: Domain of unknown function (DUF4962)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-11   28.7   5.4    2.6e-11   28.7   5.4    2.1  3  NP_001309866.1  


Domain annotation for each sequence (and alignments):
>> NP_001309866.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0     0.061     0.061     131     176 ..      37      84 ..      25      92 .. 0.78
   2 !   28.7   5.4   2.6e-11   2.6e-11     255     414 ..     150     314 ..     119     353 .. 0.80
   3 ?   -2.3   0.1     0.065     0.065     225     248 ..     780     803 ..     736     836 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.061
         DUF4962 131 aklkksHPrilllkkdwedfikrnkdnpea..kayikkaekllkkple 176
                     + + +sHP ++  +++  ++  r ++++e+  + + +  +++l++ple
  NP_001309866.1  37 NANYDSHPMLYFSRAEVAELQLRAASSHEHiaARLTEAVHTMLSSPLE 84 
                     556678***********9999999998886215567777888899987 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 2.6e-11
         DUF4962 255 naatllsllalaYDsfYdllteeekkllkkeikergkkiyk.efvnrlenhiadnHvWqmtlRiltlaalav.vgelpeAdkWldyvYevWvaRf 347
                       a  l   a+aYD  Y++l+++++++++++i + +  +y+ ++      +   nH     +  lt + + +  g l+eA  W++ v  +    +
  NP_001309866.1 150 PLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYEtSYRRGWGFQYLHNHQPTNCMALLTGSLVLMnQGYLQEAYLWTKQVLTIMEKSL 244
                     567778899*******************************7368999*********99999988886654442578******************* PP

         DUF4962 348 PvL..nkDGgWHngdsYfkvnlrtlievpalyselsGvdfFsdpWyknlalyvlysq.ppfsksagnGds 414
                       L   +DG+ ++g +Y +  +r+l +   l ++   +++F +pW+k    ++  +  p f   ++  ds
  NP_001309866.1 245 VLLreVTDGSLYEGVAYGSYTTRSLFQYMFLVQRHFNINHFGHPWLKQHFAFMYRTIlPGFQRTVAIADS 314
                     9998789****************************************99888654441345555555555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.065
         DUF4962 225 tkDkkyakeaikrllellsmdksk 248
                       Dk+ ++eai+r+  +++ ++++
  NP_001309866.1 780 FSDKRQTEEAIDRIFAISQQQQQQ 803
                     469999999999999998877433 PP



Or compare NP_001309866.1 to CDD or PaperBLAST