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Align SwissProt::P0C2H4 to PF16332 (DUF4962)

SwissProt::P0C2H4 has 958 amino acids

Query:       DUF4962  [M=476]
Accession:   PF16332.5
Description: Domain of unknown function (DUF4962)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.3e-12   32.2   3.6    2.3e-12   32.2   3.6    2.3  3  SwissProt::P0C2H4  


Domain annotation for each sequence (and alignments):
>> SwissProt::P0C2H4  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0     0.048     0.048     131     177 ..      37      85 ..      24     102 .. 0.78
   2 !   32.2   3.6   2.3e-12   2.3e-12     252     417 ..     147     317 ..     103     357 .. 0.81
   3 ?   -0.9   0.1     0.024     0.024     223     253 ..     778     808 ..     730     815 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.048
            DUF4962 131 aklkkeHPrvlllkkewedfikknkdnpea..kaylekaekllkkplkk 177
                        + + ++HP ++  ++e  ++  + ++++e+    + e  +++l++pl+ 
  SwissProt::P0C2H4  37 NANYDSHPMLYFSRAEVAELQLRAASSHEHiaARLTEAVNTMLSSPLEY 85 
                        556678**********999999988888862155677778899999975 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 2.3e-12
            DUF4962 252 gDFnaatllsllalaYDsfYdllseeekkllkkaikergkkiye.efvnrlenhiadnHvWqmtlRiltlaalav.vgelpeAdkWldyvYe 341
                        ++   a  l   a+aYD  Y++ls++++++++++i + +  +ye ++      +   nH     +  lt + + +  g l+eA  W++ v  
  SwissProt::P0C2H4 147 DEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYEtSYRRGWGFQYLHNHQPTNCMALLTGSLVLMnQGYLQEAYLWTKQVLT 238
                        555667788899*******************************84689999********99999988886654442578************* PP

            DUF4962 342 vWlaRfPgL..nkDGgWHngdsYfkvnlrtlievpalysklsGvdfFsdpWyqnnalyvlyqq.ppfsksggnGdshen 417
                        +    +  L   +DG+ ++g +Y +  +r+l +   l ++   +++F +pW++    ++  +  p f   ++  ds  n
  SwissProt::P0C2H4 239 IMEKSLVLLreVTDGSLYEGVAYGSYTTRSLFQYMFLVQRHFDINHFGHPWLKQHFAFMYRTIlPGFQRTVAIADSNYN 317
                        ******9998779****************************************99888654432445555665555555 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.024
            DUF4962 223 lLtkDkkyakeaikrllellswdkskavkgD 253
                        l   Dk+ ++eai+r++ + + ++++++k+ 
  SwissProt::P0C2H4 778 LRFSDKRQTEEAIDRIFAISQQQQQQQSKSK 808
                        44579999***********999988877765 PP



Or compare SwissProt::P0C2H4 to CDD or PaperBLAST