PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS73293 to PF16473 (Rv2179c-like)

VIMSS73293 has 823 amino acids

Query:       Rv2179c-like  [M=177]
Accession:   PF16473.9
Description: 3'-5' exoribonuclease Rv2179c-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-72  226.5   0.0    2.1e-71  225.4   0.0    1.6  1  VIMSS73293  


Domain annotation for each sequence (and alignments):
>> VIMSS73293  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.4   0.0   2.1e-71   2.1e-71       2     177 .]     642     813 ..     641     813 .. 0.98

  Alignments for each domain:
  == domain 1  score: 225.4 bits;  conditional E-value: 2.1e-71
  Rv2179c-like   2 hlmiDiEtlgneetaaivsIGavffdpetGelGeeFyarvdlesseeagaevdaeTikWWlkqssearaellkddaksledalkeleefieenedak 98 
                   hlmiD+Et+g++++a+i+sIGa+ffdp+tG++G eF +++dle +   g+ +d +TikWWlkqs ea++++++d+ ++l+dal +l+efi en+ + 
    VIMSS73293 642 HLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTIDLETA---GGVIDRDTIKWWLKQSREAQSAIMTDE-IPLDDALLQLREFIDENSGEF 734
                   9*****************************************655...99**********************998.99******************* PP

  Rv2179c-like  99 slkvwgngasfDnviLraafelagleipwkfwndrdvrTlvelakelglekkrdipfegvkhnAlddAkhqakivsaiw 177
                    ++vwgnga+fDn+iLr+++e+ g+++pw+++ndrdvrT+vel+k+++++++ +ipfeg++hnAlddA++qak+vs+iw
    VIMSS73293 735 FVQVWGNGANFDNTILRRSYERQGIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALDDARYQAKYVSVIW 813
                   ******************************************************************************9 PP



Or compare VIMSS73293 to CDD or PaperBLAST