PaperBLAST – Find papers about a protein or its homologs

 

Align WP_004112679.1 to PF16473 (DUF5051)

WP_004112679.1 has 359 amino acids

Query:       DUF5051  [M=166]
Accession:   PF16473.5
Description: 3' exoribonuclease, RNase T-like
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-15   41.7   0.1    2.7e-14   39.7   0.0    2.1  2  WP_004112679.1  


Domain annotation for each sequence (and alignments):
>> WP_004112679.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.14      0.14     128     128 ..      82      82 ..      14     154 .. 0.57
   2 !   39.7   0.0   2.7e-14   2.7e-14       2     164 ..     178     350 ..     177     352 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.14
         DUF5051 128 l 128
                     +
  WP_004112679.1  82 S 82 
                     1 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 2.7e-14
         DUF5051   2 klmiDiEtlgne.etaelvsIGaVffpetG...eFyaeidlesdeeag.idaetieWWlkqskearaellkdtqeakslkdalqaleeFlekslk 91 
                      ++iD Et+g + +  ++++IGaV f+ +G   eF + i++++d+  + ++++ i       + + +++l++      l+ al+++ +F+  +l 
  WP_004112679.1 178 FVVIDCETTGLNsKVDKIIEIGAVKFI-DGkieEFQKLININCDSVSNfNKNNFIPNEIIELTGITSNMLESY--GVGLDLALREFIDFV-GKLP 268
                     689*******9967778*********6.67799**********955554333333333334455666666555..788999999999999.68** PP

         DUF5051  92 vwangasfDlviLraafel.....lipwkywndrdvrtlvala.....pelekgeekkreipfegvkHnALaDAkhqakavsa 164
                     + +++ sfD+  +++a+       +  +++ +  d++  v+++     + ++k+  ++++i  e v H AL DA+  a++v  
  WP_004112679.1 269 LLGYNVSFDIGFFNSALFSldeklSSAFSVNKVIDISRFVKHDrrflkNYQLKTVLHEYNI-SESVPHRALLDARLTARLVLN 350
                     *************987444699983456666666666666666433321122222344444.3489***********999875 PP



Or compare WP_004112679.1 to CDD or PaperBLAST