PaperBLAST – Find papers about a protein or its homologs

 

Align WP_012087031.1 to PF16473 (Rv2179c-like)

WP_012087031.1 has 601 amino acids

Query:       Rv2179c-like  [M=177]
Accession:   PF16473.9
Description: 3'-5' exoribonuclease Rv2179c-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-11   30.2   0.0      2e-10   26.8   0.0    2.2  1  WP_012087031.1  


Domain annotation for each sequence (and alignments):
>> WP_012087031.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0     2e-10     2e-10       3     175 ..      29     191 ..      27     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2e-10
    Rv2179c-like   3 lmiDiEtlgne.etaaivsIGavffdpetGelGeeFyarvdlesseeagaevdaeTikWWlkqssearaellkdd...aksledalkeleefiee 93 
                     +++D+Et+g + ++a i++IGav++    G++  eF++ v ++s + a                 ++   ++++    a+sl ++l ++ ef   
  WP_012087031.1  29 VVVDLETTGGApADAGITEIGAVKVR--GGQVLGEFQTLVRPSSPIPAFV---------------QVLTGITNGMvatAPSLAQVLPAFLEFA-- 104
                     78*******99899*********665..999999********99976442...............2333333333222788888888888888.. PP

    Rv2179c-like  94 nedakslkvwgngasfDnviLraafelagleipwkfwndrdvrTlvela..........kelglekkrdipfe..........gvkhnAlddAkh 168
                      + ++ + +++++a +D + L+aa +++g + p    + r v+T+v  +          ++l                       +h Al+dA++
  WP_012087031.1 105 -GFERGTVLVAHNAPYDTSFLKAACQVTGRPWP----KPRVVDTVVLARqlvdrdeapdRKL----------GtlarlfgtatTPDHRALHDARA 184
                     .5778999****************999877766....8899999998884443333322222..........23344565555789********9 PP

    Rv2179c-like 169 qakivsa 175
                      + +++a
  WP_012087031.1 185 TVDVLHA 191
                     9998876 PP



Or compare WP_012087031.1 to CDD or PaperBLAST