PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS133747 to TIGR00001

VIMSS133747 has 66 amino acids

Query:       TIGR00001  [M=63]
Accession:   TIGR00001
Description: rpmI_bact: ribosomal protein bL35
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-25   75.4  11.8    1.9e-25   75.3  11.8    1.0  1  VIMSS133747  


Domain annotation for each sequence (and alignments):
>> VIMSS133747  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3  11.8   1.9e-25   1.9e-25       1      62 [.       2      63 ..       2      64 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 1.9e-25
    TIGR00001  1 pKmKTkkaaaKRFkvtgsGkikrkkagkrHlltkKsskrkRqLrkkalvsksdlkrvkllLp 62
                 pK KT++a+aKRFk tgsG +kr +a+++H +  K++k++R+Lrk ++v+++d+kr+k++L 
  VIMSS133747  2 PKQKTHRASAKRFKRTGSGGLKRFRAYTSHRFHGKTKKQRRHLRKASMVHSGDYKRIKAMLT 63
                 9***********************************************************96 PP



Or compare VIMSS133747 to CDD or PaperBLAST