PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS148682 to TIGR00001

VIMSS148682 has 65 amino acids

Query:       TIGR00001  [M=63]
Accession:   TIGR00001
Description: rpmI_bact: ribosomal protein L35
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-30   90.9   6.4    2.7e-30   90.8   6.4    1.0  1  VIMSS148682  


Domain annotation for each sequence (and alignments):
>> VIMSS148682  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   6.4   2.7e-30   2.7e-30       1      63 []       2      64 ..       2      64 .. 0.99

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 2.7e-30
    TIGR00001  1 pKmKTkkaaaKRFkvtgsGkikrkkagkrHlltkKsskrkRqLrkkalvsksdlkrvkllLpy 63
                 pK+KT ++aaKRFk+tg+G +k+k+a+ rH+ltkK++krkR+Lr ka+vsk+dl  v+++Lpy
  VIMSS148682  2 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPY 64
                 9*************************************************************8 PP



Or compare VIMSS148682 to CDD or PaperBLAST