PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS59192 to TIGR00001

VIMSS59192 has 64 amino acids

Query:       TIGR00001  [M=63]
Accession:   TIGR00001
Description: rpmI_bact: ribosomal protein bL35
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-27   81.5  11.2    2.3e-27   81.4  11.2    1.0  1  VIMSS59192  


Domain annotation for each sequence (and alignments):
>> VIMSS59192  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4  11.2   2.3e-27   2.3e-27       1      61 [.       2      61 ..       2      63 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 2.3e-27
   TIGR00001  1 pKmKTkkaaaKRFkvtgsGkikrkkagkrHlltkKsskrkRqLrkkalvsksdlkrvkllL 61
                pKmKTk++aaKRFk+t+ G +k+k+a+k+H+ltk+++krkRqLr++++++ksd++rv++ L
  VIMSS59192  2 PKMKTKSGAAKRFKKTAGG-LKHKHAFKSHILTKMTTKRKRQLRGTSMLNKSDVARVERSL 61
                9***************777.*************************************9887 PP



Or compare VIMSS59192 to CDD or PaperBLAST