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Family Search for PF01169 (UPF0016)

PF01169.19 hits 49 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

K9ULS7 GDT1 family protein from Chamaesiphon minutus (strain ATCC 27169 / PCC 6605)
2 alignments in 6:212 / 220 (74.5%), covering up to 98.7% of PF01169, 156.8 bits

E0UDP4 GDT1 family protein from Gloeothece verrucosa (strain PCC 7822)
2 alignments in 6:203 / 211 (70.6%), covering up to 100.0% of PF01169, 156.7 bits

B7FUM2 GDT1 family protein (Fragment) from Phaeodactylum tricornutum (strain CCAP 1055/1)
2 alignments in 9:215 / 218 (68.8%), covering up to 98.7% of PF01169, 156.2 bits

P52876 GDT1-like protein sll0615 from Synechocystis sp. (strain PCC 6803 / Kazusa)
sll0615 transmembrane protein FT27 (NCBI ptt file) from Synechocystis sp. PCC 6803
2 alignments in 6:197 / 206 (72.3%), covering up to 98.7% of PF01169, 155.6 bits

F0Y333 GDT1 family protein (Fragment) from Aureococcus anophagefferens
2 alignments in 6:211 / 223 (67.3%), covering up to 98.7% of PF01169, 152.2 bits

NP_035756 transmembrane protein 165 precursor from Mus musculus
2 alignments in 98:311 / 323 (46.1%), covering up to 98.7% of PF01169, 150.1 bits

NP_997848 transmembrane protein 165 precursor from Danio rerio
2 alignments in 78:293 / 305 (48.9%), covering up to 98.7% of PF01169, 150.1 bits

TM165_HUMAN / Q9HC07 Transmembrane protein 165; Transmembrane protein PT27; Transmembrane protein TPARL from Homo sapiens (Human) (see 4 papers)
TC 2.A.106.2.2 / Q9HC07 Ca2+:H+ antiporter, TMEM165 (PT27; TPARL) of 324 aas and 7 TMSs in a 1 (N-erminal) + 3 + 3 TMS arrangement from Homo sapiens
NP_060945 transmembrane protein 165 precursor from Homo sapiens
2 alignments in 98:312 / 324 (46.0%), covering up to 98.7% of PF01169, 149.0 bits

B9MIH1 GDT1 family protein from Acidovorax ebreus (strain TPSY)
2 alignments in 5:179 / 192 (79.2%), covering up to 98.7% of PF01169, 148.9 bits

Q2JWH3 GDT1 family protein from Synechococcus sp. (strain JA-3-3Ab)
2 alignments in 6:198 / 207 (72.5%), covering up to 98.7% of PF01169, 147.6 bits

LOC107436693 transmembrane protein 165-like from Parasteatoda tepidariorum
2 alignments in 89:302 / 312 (47.8%), covering up to 98.7% of PF01169, 146.8 bits

AT1G25520 hypothetical protein (RefSeq) from Arabidopsis thaliana
Q9C6M1 GDT1-like protein 4 from Arabidopsis thaliana
2 alignments in 9:220 / 230 (65.2%), covering up to 98.7% of PF01169, 145.7 bits

MSMEG_5329 hypothetical protein (NCBI) from Mycobacterium smegmatis str. MC2 155
2 alignments in 6:180 / 246 (61.0%), covering up to 98.7% of PF01169, 144.6 bits

AT1G68650 hypothetical protein (RefSeq) from Arabidopsis thaliana
2 alignments in 9:218 / 228 (65.8%), covering up to 98.7% of PF01169, 144.5 bits

ABZJ_03714 TMEM165/GDT1 family protein from Acinetobacter baumannii MDR-ZJ06
2 alignments in 5:181 / 191 (79.6%), covering up to 98.7% of PF01169, 144.2 bits

Q48MR5 GDT1 family protein from Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
2 alignments in 6:180 / 194 (78.4%), covering up to 98.7% of PF01169, 141.5 bits

PA4629 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
2 alignments in 6:178 / 192 (78.6%), covering up to 100.0% of PF01169, 141.0 bits

D3TSM2 GDT1 family protein from Glossina morsitans morsitans
2 alignments in 106:320 / 331 (45.0%), covering up to 100.0% of PF01169, 140.9 bits

SO_1071 TMEM165/GDT1 family protein from Shewanella oneidensis MR-1
2 alignments in 5:178 / 184 (82.6%), covering up to 98.7% of PF01169, 139.3 bits

VC0022 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
2 alignments in 21:194 / 200 (76.5%), covering up to 98.7% of PF01169, 139.1 bits

SO1071 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
2 alignments in 18:191 / 197 (77.2%), covering up to 98.7% of PF01169, 138.9 bits

PpSQ1_03570 TMEM165/GDT1 family protein from Pseudomonas putida
2 alignments in 5:178 / 193 (78.8%), covering up to 100.0% of PF01169, 138.8 bits

PAM71_ARATH / Q94AX5 Protein PAM71, chloroplastic; CA(2+)/H(+) ANTIPORTER 1; GDT1-like protein 1; PHOTOSYNTHESIS AFFECTED MUTANT71 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT1G64150 hypothetical protein (RefSeq) from Arabidopsis thaliana
2 alignments in 160:361 / 370 (43.2%), covering up to 98.7% of PF01169, 138.4 bits

MNEA_VIBC3 / A0A0H3AJF5 Putative manganese exporter; Manganese exporter A from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) (see paper)
2 alignments in 21:194 / 200 (76.5%), covering up to 98.7% of PF01169, 138.4 bits

PA71H_ARATH / Q9T0H9 Protein PAM71-homolog, chloroplastic; GDT1-like protein 2; PHOTOSYNTHESIS AFFECTED MUTANT71-homolog from Arabidopsis thaliana (Mouse-ear cress) (see paper)
TC 2.A.106.1.7 / Q9T0H9 Photosynthesis-affected mutant 71, PAM71 homologue, PAM71-HL, of 359 aas and 7 TMSs (Hoecker et al. 2017). Probably a manganese ion transporter; a member of the UPF0016 family from Arabidopsis thaliana
AT4G13590 hypothetical protein (RefSeq) from Arabidopsis thaliana
2 alignments in 147:351 / 359 (43.2%), covering up to 98.7% of PF01169, 137.4 bits

VDA_003255 TMEM165/GDT1 family protein from Photobacterium damselae subsp. damselae CIP 102761
2 alignments in 5:178 / 185 (82.7%), covering up to 98.7% of PF01169, 137.1 bits

TGME49_119550 membrane protein C17G8.08c, putative from Toxoplasma gondii ME49
2 alignments in 63:335 / 343 (44.0%), covering up to 100.0% of PF01169, 137.0 bits

AT5G36290 hypothetical protein (RefSeq) from Arabidopsis thaliana
2 alignments in 86:284 / 293 (51.2%), covering up to 98.7% of PF01169, 136.9 bits

GDT1_YEAST / P38301 GCR1-dependent translation factor 1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
NP_009746 putative ribosome biosynthesis protein GDT1 from Saccharomyces cerevisiae S288C
YBR187W Gdt1p (RefSeq) from Saccharomyces cerevisiae
2 alignments in 43:268 / 280 (53.6%), covering up to 98.7% of PF01169, 136.6 bits

SPAC17G8.08c human TMEM165 homolog (RefSeq) from Schizosaccharomyces pombe
2 alignments in 51:278 / 287 (52.3%), covering up to 98.7% of PF01169, 135.7 bits

VSAL_II1080 TMEM165/GDT1 family protein from Aliivibrio salmonicida LFI1238
2 alignments in 5:178 / 185 (82.7%), covering up to 97.3% of PF01169, 135.3 bits

VSAL_II1080 membrane protein (RefSeq) from Vibrio salmonicida LFI1238
2 alignments in 9:182 / 189 (81.0%), covering up to 97.3% of PF01169, 135.2 bits

Psest_3226 TMEM165/GDT1 family protein from Pseudomonas stutzeri RCH2
2 alignments in 5:179 / 195 (77.9%), covering up to 97.3% of PF01169, 135.1 bits

A1S_3326 hypothetical protein (RefSeq) from Acinetobacter baumannii ATCC 17978
2 alignments in 1:166 / 176 (80.1%), covering up to 98.7% of PF01169, 135.0 bits

XP_712922 putative ribosome biosynthesis protein from Candida albicans SC5314
2 alignments in 106:337 / 350 (42.9%), covering up to 98.7% of PF01169, 134.3 bits

D1JG69 Conserved hypothetical membrane protein, UPF0016 family from archaeon
2 alignments in 6:179 / 185 (81.6%), covering up to 97.3% of PF01169, 130.3 bits

YLY5_SCHPO / Q9P7Q0 GDT1-like protein C186.05c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPAC186.05c human TMEM165 homolog (RefSeq) from Schizosaccharomyces pombe
2 alignments in 28:254 / 262 (57.3%), covering up to 98.7% of PF01169, 130.0 bits

L7L942 GDT1 family protein from Gordonia hirsuta DSM 44140 = NBRC 16056
2 alignments in 10:192 / 251 (66.1%), covering up to 98.7% of PF01169, 129.6 bits

I7M883 GDT1 family protein from Tetrahymena thermophila (strain SB210)
2 alignments in 51:286 / 296 (50.7%), covering up to 97.3% of PF01169, 128.6 bits

CNE04690 vacuole protein (RefSeq) from Cryptococcus neoformans var. neoformans JEC21
2 alignments in 15:284 / 302 (49.7%), covering up to 100.0% of PF01169, 128.4 bits

C1MR94 GDT1 family protein (Fragment) from Micromonas pusilla (strain CCMP1545)
2 alignments in 4:207 / 207 (69.1%), covering up to 98.7% of PF01169, 128.4 bits

Rv3848 PROBABLE CONSERVED TRANSMEMBRANE PROTEIN (NCBI) from Mycobacterium tuberculosis H37Rv
2 alignments in 6:180 / 302 (49.7%), covering up to 98.7% of PF01169, 123.8 bits

AFUA_3G07080 UPF0016 domain protein, putative from Aspergillus fumigatus Af293
2 alignments in 255:532 / 541 (31.2%), covering up to 100.0% of PF01169, 123.3 bits

BCG_3911 putative transmembrane protein (NCBI) from Mycobacterium bovis BCG str. Pasteur 1173P2
2 alignments in 6:180 / 302 (49.7%), covering up to 98.7% of PF01169, 122.8 bits

SCO2347 integral membrane protein (NCBI) from Streptomyces coelicolor A3(2)
2 alignments in 8:183 / 193 (77.7%), covering up to 97.3% of PF01169, 117.9 bits

G0PPC8 GDT1 family protein from Streptomyces sp. ACT-1
2 alignments in 9:184 / 194 (76.8%), covering up to 97.3% of PF01169, 112.1 bits

ssr1558 hypothetical protein (NCBI ptt file) from Synechocystis sp. PCC 6803
Aligns to 7:82 / 92 (82.6%), covers 97.3% of PF01169, 68.8 bits

rrnAC0497 unknown (NCBI) from Haloarcula marismortui ATCC 43049
Aligns to 53:129 / 156 (49.4%), covers 97.3% of PF01169, 60.1 bits

J2KV33 GDT1 family protein from Rhizobium sp. CF142
Aligns to 8:83 / 250 (30.4%), covers 97.3% of PF01169, 28.6 bits

Or search for genetic data about PF01169 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory