PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF01868 (UPF0086)

PF01868.16 hits 18 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

HVO_2556 ribonuclease P protein component 1 (RefSeq) from Haloferax volcanii DS2
Aligns to 6:136 / 143 (91.6%), covers 98.8% of PF01868, 97.8 bits

XP_006540350 ribonuclease P protein subunit p29 isoform X1 from Mus musculus
Aligns to 88:170 / 180 (46.1%), covers 100.0% of PF01868, 93.5 bits

RPP29_HUMAN / O95707 Ribonuclease P protein subunit p29; hPOP4; EC 3.1.26.5 from Homo sapiens (Human) (see 2 papers)
NP_006618 ribonuclease P protein subunit p29 from Homo sapiens
Aligns to 128:210 / 220 (37.7%), covers 100.0% of PF01868, 92.4 bits

RNP1_METJA / Q57903 Ribonuclease P protein component 1; RNase P component 1; Rpp29; EC 3.1.26.5 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see 3 papers)
NP_247439 conserved hypothetical protein (NCBI ptt file) from Methanocaldococcus jannaschii DSM 2661
Aligns to 5:87 / 95 (87.4%), covers 98.8% of PF01868, 88.3 bits

CG8038 uncharacterized protein from Drosophila melanogaster
Aligns to 114:196 / 206 (40.3%), covers 97.6% of PF01868, 88.0 bits

YP_001325580 ribonuclease P protein component 1 (RefSeq) from Methanococcus aeolicus Nankai-3
Aligns to 5:88 / 96 (87.5%), covers 98.8% of PF01868, 86.7 bits

RNP1_PYRFU / Q8U007 Ribonuclease P protein component 1; RNase P component 1; Rpp29; EC 3.1.26.5 from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see 5 papers)
NP_579545 hypothetical protein (NCBI ptt file) from Pyrococcus furiosus DSM 3638
Aligns to 41:123 / 127 (65.4%), covers 98.8% of PF01868, 86.1 bits

O28362 ribonuclease P (EC 3.1.26.5) from Archaeoglobus fulgidus (see 2 papers)
AF1917 conserved hypothetical protein (NCBI ptt file) from Archaeoglobus fulgidus DSM 4304
Aligns to 8:89 / 102 (80.4%), covers 98.8% of PF01868, 80.8 bits

POP4_YEAST / P38336 RNases MRP/P 32.9 kDa subunit; RNA-processing protein POP4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
YBR257W Pop4p (RefSeq) from Saccharomyces cerevisiae
Aligns to 171:263 / 279 (33.3%), covers 98.8% of PF01868, 79.9 bits

P14022 Ribonuclease P protein component 1 from Methanococcus vannielii
YP_001323236 ribonuclease P protein component 1 (RefSeq) from Methanococcus vannielii SB
Aligns to 5:91 / 99 (87.9%), covers 100.0% of PF01868, 79.9 bits

RNP1_SCHPO / Q9P7W9 Probable ribonuclease P protein subunit 1; EC 3.1.26.5 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
Aligns to 121:207 / 217 (40.1%), covers 98.8% of PF01868, 79.0 bits

RNP1_METTH / O26119 Ribonuclease P protein component 1; RNase P component 1; Rpp29; EC 3.1.26.5 from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum) (see 2 papers)
MTH11 conserved protein (NCBI ptt file) from Methanothermobacter thermautotrophicus str. Delta H
Aligns to 5:88 / 93 (90.3%), covers 98.8% of PF01868, 78.4 bits

RNP1_PYRHO / O59425 Ribonuclease P protein component 1; RNase P component 1; Rpp29; EC 3.1.26.5 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see 4 papers)
PH1771 hypothetical protein (NCBI ptt file) from Pyrococcus horikoshii OT3
Aligns to 41:122 / 127 (64.6%), covers 98.8% of PF01868, 78.2 bits

YP_303669 putative ribonuclease P subunit P29 (NCBI) from Methanosarcina barkeri str. fusaro
Aligns to 10:102 / 110 (84.5%), covers 97.6% of PF01868, 76.9 bits

RNP1_METMP / P60832 Ribonuclease P protein component 1; RNase P component 1; Rpp29; EC 3.1.26.5 from Methanococcus maripaludis (strain S2 / LL) (see paper)
P60832 ribonuclease P (subunit 2/5) (EC 3.1.26.5) from Methanococcus maripaludis (see paper)
Aligns to 3:88 / 96 (89.6%), covers 100.0% of PF01868, 76.6 bits

TP01_1174 hypothetical protein from Theileria parva strain Muguga
Aligns to 162:245 / 253 (33.2%), covers 95.2% of PF01868, 76.1 bits

AT2G43190 ribonuclease P family protein (RefSeq) from Arabidopsis thaliana
Aligns to 215:292 / 296 (26.4%), covers 90.5% of PF01868, 68.5 bits

Sb09g023150 No description from Sorghum bicolor
Aligns to 230:310 / 322 (25.2%), covers 91.7% of PF01868, 66.2 bits

Or search for genetic data about PF01868 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory