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Family Search for PF01930 (Cas_Cas4)

PF01930.17 hits 45 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

MTH1085 conserved protein (NCBI ptt file) from Methanothermobacter thermautotrophicus str. Delta H
Aligns to 15:175 / 175 (92.0%), covers 99.4% of PF01930, 194.5 bits

MJ0377 conserved hypothetical protein (NCBI ptt file) from Methanocaldococcus jannaschii DSM 2661
Aligns to 12:170 / 170 (93.5%), covers 99.4% of PF01930, 185.0 bits

TTE2659 RecB family exonuclease (NCBI ptt file) from Thermoanaerobacter tengcongensis MB4
Aligns to 11:170 / 170 (94.1%), covers 99.4% of PF01930, 180.1 bits

CD2977 hypothetical protein (RefSeq) from Clostridium difficile 630
Aligns to 11:169 / 172 (92.4%), covers 99.4% of PF01930, 179.5 bits

PG2015 CRISPR-associated protein Cas4 (NCBI) from Porphyromonas gingivalis W83
Aligns to 5:166 / 170 (95.3%), covers 98.8% of PF01930, 178.6 bits

NEQ021 NEQ021 (NCBI) from Nanoarchaeum equitans Kin4-M
Aligns to 5:166 / 168 (96.4%), covers 98.8% of PF01930, 175.2 bits

CAS4_HALVD / D4GQN9 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
Aligns to 26:183 / 183 (86.3%), covers 99.4% of PF01930, 145.3 bits

COI_0270 CRISPR-associated protein Cas4 from Mannheimia haemolytica serotype A2 str. OVINE
Aligns to 26:204 / 221 (81.0%), covers 98.8% of PF01930, 126.5 bits

MHA_0346 CRISPR-associated protein Cas4 from Mannheimia haemolytica PHL213
Aligns to 26:204 / 224 (79.9%), covers 98.8% of PF01930, 121.0 bits

COK_0801 CRISPR-associated protein Cas4 from Mannheimia haemolytica serotype A2 str. BOVINE
Aligns to 26:204 / 221 (81.0%), covers 98.8% of PF01930, 119.5 bits

XALc_2890 probable crispr-associated protein cas4 (RefSeq) from Xanthomonas albilineans
Aligns to 8:189 / 210 (86.7%), covers 98.8% of PF01930, 119.1 bits

SSO1392 Hypothetical protein (NCBI ptt file) from Sulfolobus solfataricus P2
Aligns to 20:191 / 201 (85.6%), covers 98.8% of PF01930, 111.2 bits

TT_P0197 No description from Thermus thermophilus HB27
Aligns to 11:183 / 194 (89.2%), covers 98.8% of PF01930, 97.8 bits

NGO1001 hypothetical protein, putative phage associated protein (NCBI) from Neisseria gonorrhoeae FA 1090
Aligns to 19:160 / 161 (88.2%), covers 74.7% of PF01930, 81.8 bits

PFREUD_03690 CRISPR-associated endonuclease Cas4/Cas1 from Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Aligns to 8:184 / 533 (33.2%), covers 99.4% of PF01930, 81.3 bits

GKIL_1964 CRISPR-associated protein Cas4 from Gloeobacter kilaueensis JS1
Aligns to 9:185 / 198 (89.4%), covers 98.1% of PF01930, 81.1 bits

GSU0057 CRISPR-associated protein Cas1/Cas4 (NCBI) from Geobacter sulfurreducens PCA
Aligns to 12:198 / 559 (33.5%), covers 98.1% of PF01930, 79.7 bits

CS4F1_MYXXD / Q1CW50 CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion; EC 3.1.-.-; EC 3.1.12.1 from Myxococcus xanthus (strain DK 1622) (see paper)
Aligns to 33:209 / 568 (31.2%), covers 98.1% of PF01930, 71.3 bits

Pisl_1722 CRISPR-associated protein Cas4 (NCBI) from Pyrobaculum islandicum DSM 4184
Aligns to 54:213 / 218 (73.4%), covers 96.9% of PF01930, 68.7 bits

Tneu_0576 CRISPR-associated Cas4 family protein (RefSeq) from Thermoproteus neutrophilus V24Sta
Aligns to 12:174 / 180 (90.6%), covers 95.1% of PF01930, 66.2 bits

Pars_0755 CRISPR-associated protein Cas4 (RefSeq) from Pyrobaculum arsenaticum DSM 13514
Aligns to 19:177 / 178 (89.3%), covers 97.5% of PF01930, 65.6 bits

TTX_1548 CRISPR-associated protein Cas4 from Thermoproteus tenax Kra 1
Aligns to 52:213 / 215 (75.3%), covers 98.1% of PF01930, 65.3 bits

PAE0079 conserved hypothetical protein (NCBI ptt file) from Pyrobaculum aerophilum str. IM2
Aligns to 8:170 / 171 (95.3%), covers 95.7% of PF01930, 61.4 bits

PAE1763 conserved hypothetical protein (NCBI ptt file) from Pyrobaculum aerophilum str. IM2
Aligns to 54:212 / 214 (74.3%), covers 96.9% of PF01930, 60.0 bits

CAS4_THETK / G4RJY5 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Thermoproteus tenax (strain ATCC 35583 / DSM 2078 / JCM 9277 / NBRC 100435 / Kra 1) (see paper)
Aligns to 6:182 / 190 (93.2%), covers 97.5% of PF01930, 58.1 bits

CAS4_FRATN / A0Q5Y6 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Francisella tularensis subsp. novicida (strain U112) (see paper)
Aligns to 13:195 / 196 (93.4%), covers 96.9% of PF01930, 58.1 bits

SSO1449 Hypothetical protein (NCBI ptt file) from Sulfolobus solfataricus P2
Aligns to 3:171 / 175 (96.6%), covers 98.1% of PF01930, 57.8 bits

MM_0557 hypothetical protein (NCBI ptt file) from Methanosarcina mazei Goe1
Aligns to 12:199 / 199 (94.5%), covers 98.8% of PF01930, 57.5 bits

SiRe_0763 CRISPR-associated protein Cas4 from Sulfolobus islandicus REY15A
Aligns to 3:171 / 175 (96.6%), covers 97.5% of PF01930, 57.2 bits

CAS4_PYRCJ / A3MTK6 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Pyrobaculum calidifontis (strain JCM 11548 / VA1) (see 2 papers)
Pcal_0546 CRISPR-associated protein Cas4 (NCBI) from Pyrobaculum calidifontis JCM 11548
Aligns to 54:211 / 213 (74.2%), covers 96.9% of PF01930, 57.1 bits

PAE0198 conserved hypothetical protein (NCBI ptt file) from Pyrobaculum aerophilum str. IM2
Aligns to 6:182 / 190 (93.2%), covers 97.5% of PF01930, 56.5 bits

Pcal_1277 CRISPR-associated protein Cas4 (NCBI) from Pyrobaculum calidifontis JCM 11548
Aligns to 6:181 / 189 (93.1%), covers 97.5% of PF01930, 55.5 bits

Tneu_1142 CRISPR-associated Cas4 family protein (RefSeq) from Thermoproteus neutrophilus V24Sta
Aligns to 6:182 / 190 (93.2%), covers 97.5% of PF01930, 54.8 bits

Pars_1121 CRISPR-associated protein Cas4 (RefSeq) from Pyrobaculum arsenaticum DSM 13514
Aligns to 7:182 / 190 (92.6%), covers 96.9% of PF01930, 49.9 bits

FTL_1320 hypothetical protein (NCBI) from Francisella tularensis subsp. holarctica
Aligns to 11:189 / 190 (94.2%), covers 96.9% of PF01930, 47.6 bits

FN0524 DNA helicase II (NCBI ptt file) from Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Aligns to 756:917 / 919 (17.6%), covers 71.6% of PF01930, 43.5 bits

lpp0163 hypothetical protein (NCBI) from Legionella pneumophila str. Paris
Aligns to 9:195 / 197 (94.9%), covers 97.5% of PF01930, 41.7 bits

FACI_IFERC00001G0010 ATP-dependent helicase from Ferroplasma acidarmanus fer1
Aligns to 734:886 / 889 (17.2%), covers 70.4% of PF01930, 33.9 bits

CAS4_SULSO / Q97TX9 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (see 2 papers)
Q97TX9 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming) (EC 3.1.12.1) from Sulfolobus solfataricus (see 2 papers)
SSO0001 Hypothetical protein (NCBI ptt file) from Sulfolobus solfataricus P2
Aligns to 22:199 / 202 (88.1%), covers 96.9% of PF01930, 33.6 bits

NP_001184943 DNA replication helicase from Arabidopsis thaliana
Aligns to 482:661 / 1315 (13.7%), covers 90.1% of PF01930, 30.0 bits

NGO1000 hypothetical protein, putative phage associated protein (NCBI) from Neisseria gonorrhoeae FA 1090
Aligns to 14:56 / 75 (57.3%), covers 24.1% of PF01930, 26.7 bits

TTHV050 hypothetical protein from Thermus thermophilus HB8
Aligns to 143:227 / 245 (34.7%), covers 32.7% of PF01930, 26.1 bits

DNA2_SCHPO / Q9URU2 DNA replication ATP-dependent helicase/nuclease dna2 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 5 papers)
NP_596499 DNA replication endonuclease-helicase Dna2 from Schizosaccharomyces pombe
Aligns to 536:690 / 1397 (11.1%), covers 58.6% of PF01930, 26.1 bits

dna2 / RF|NP_596499.1 DNA replication endonuclease-helicase Dna2 from Schizosaccharomyces pombe (see 4 papers)
Aligns to 537:691 / 1398 (11.1%), covers 58.6% of PF01930, 26.1 bits

Smar_1195 CRISPR-associated protein Cas4 (NCBI) from Staphylothermus marinus F1
Aligns to 34:203 / 207 (82.1%), covers 96.3% of PF01930, 25.9 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory