PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF01933 (UPF0052)

PF01933.18 hits 26 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BH3568 hypothetical protein (NCBI) from Bacillus halodurans C-125
Aligns to 6:292 / 322 (89.1%), covers 99.0% of PF01933, 373.9 bits

alr2298 hypothetical protein (NCBI ptt file) from Nostoc sp. PCC 7120
Aligns to 139:426 / 456 (63.2%), covers 99.7% of PF01933, 369.4 bits

GNGF_BACSU / O06974 Gluconeogenesis factor from Bacillus subtilis (strain 168) (see 2 papers)
NP_391356 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 7:293 / 317 (90.5%), covers 99.7% of PF01933, 366.7 bits

sll0154 hypothetical 35.6 kD protein (NCBI ptt file) from Synechocystis sp. PCC 6803
Aligns to 149:435 / 462 (62.1%), covers 99.7% of PF01933, 363.8 bits

SA0721 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
SAUSA300_0749 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus USA300_FPR3757
Aligns to 6:291 / 331 (86.4%), covers 98.3% of PF01933, 349.0 bits

lmo2473 conserved hypothetical protein (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 9:292 / 322 (88.2%), covers 99.7% of PF01933, 328.4 bits

lp_0780 unknown (NCBI ptt file) from Lactobacillus plantarum WCFS1
Aligns to 13:304 / 333 (87.7%), covers 99.7% of PF01933, 324.7 bits

LGG_00928 extracellular lipase/esterase precursor (RefSeq) from Lactobacillus rhamnosus GG
Aligns to 18:311 / 342 (86.0%), covers 99.7% of PF01933, 321.3 bits

stu0832 hypothetical protein (NCBI) from Streptococcus thermophilus LMG 18311
Aligns to 6:298 / 324 (90.4%), covers 99.7% of PF01933, 312.7 bits

SPy0653, SPy_0653 conserved hypothetical protein (NCBI ptt file) from Streptococcus pyogenes M1 GAS
Aligns to 6:298 / 325 (90.2%), covers 98.3% of PF01933, 311.5 bits

YbhK / b0780 putative transferase YbhK from Escherichia coli K-12 substr. MG1655 (see 3 papers)
Aligns to 12:300 / 302 (95.7%), covers 95.6% of PF01933, 266.3 bits

VV1197 conserved hypothetical protein (NCBI) from Vibrio vulnificus YJ016
Aligns to 9:294 / 296 (96.6%), covers 94.9% of PF01933, 255.8 bits

SCO1951 hypothetical protein (NCBI) from Streptomyces coelicolor A3(2)
Aligns to 48:335 / 363 (79.3%), covers 89.4% of PF01933, 240.0 bits

YNB1_YEAST / P53980 Uncharacterized protein YNL011C from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
YNL011C Putative protein of unknown function; YNL011C is not an essential gene (RefSeq) from Saccharomyces cerevisiae
Aligns to 3:440 / 444 (98.6%), covers 95.9% of PF01933, 237.9 bits

GNGF_MYCTU / P9WMU5 Putative gluconeogenesis factor from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
Rv1422 hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
NP_215938 hypothetical protein from Mycobacterium tuberculosis H37Rv
Aligns to 5:297 / 342 (85.7%), covers 93.5% of PF01933, 237.1 bits

Mb1457 CONSERVED HYPOTHETICAL PROTEIN (NCBI) from Mycobacterium bovis AF2122/97
Aligns to 5:297 / 342 (85.7%), covers 93.5% of PF01933, 235.9 bits

MSMEG_3080 hypothetical protein (NCBI) from Mycobacterium smegmatis str. MC2 155
Aligns to 5:295 / 354 (82.2%), covers 90.8% of PF01933, 233.9 bits

MSMEG_1830 lppg:fo 2-phospho-l-lactate transferase (NCBI) from Mycobacterium smegmatis str. MC2 155
Aligns to 3:317 / 327 (96.3%), covers 87.7% of PF01933, 220.7 bits

Rv3261 PROBABLE F420 BIOSYNTHESIS PROTEIN FBIA (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 3:318 / 331 (95.5%), covers 87.7% of PF01933, 214.0 bits

ML0759 conserved hypothetical protein (NCBI ptt file) from Mycobacterium leprae TN
Aligns to 49:357 / 379 (81.5%), covers 87.7% of PF01933, 211.4 bits

MAP3374 hypothetical protein (NCBI) from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 9:332 / 343 (94.5%), covers 87.4% of PF01933, 207.6 bits

XP_003717966 hypothetical protein from Magnaporthe oryzae 70-15
Aligns to 36:492 / 522 (87.5%), covers 98.3% of PF01933, 204.6 bits

An14g06550 hypothetical protein from Aspergillus niger CBS 513.88
Aligns to 11:443 / 509 (85.1%), covers 82.3% of PF01933, 203.5 bits

AF0917 conserved hypothetical protein (NCBI ptt file) from Archaeoglobus fulgidus DSM 4304
Aligns to 1:294 / 296 (99.3%), covers 92.2% of PF01933, 170.3 bits

COFD_METJA / Q58653 2-phospho-L-lactate transferase; EC 2.7.8.28; LPPG:FO 2-phospho-L-lactate transferase from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
Q58653 2-phospho-L-lactate transferase (EC 2.7.8.28) from Methanocaldococcus jannaschii (see paper)
MJ1256 conserved hypothetical protein (NCBI ptt file) from Methanocaldococcus jannaschii DSM 2661
Aligns to 5:305 / 311 (96.8%), covers 89.8% of PF01933, 167.8 bits

Q8PVT6 2-phospho-L-lactate transferase (EC 2.7.8.28) from Methanosarcina mazei (see paper)
Aligns to 1:296 / 303 (97.7%), covers 88.1% of PF01933, 164.9 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory