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Family Search for PF02130 (UPF0054)

PF02130.17 hits 33 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SAOUHSC_01672 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus NCTC 8325
Aligns to 12:150 / 155 (89.7%), covers 95.3% of PF02130, 160.7 bits

lmo1465 similar to unknown proteins (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 13:157 / 161 (90.1%), covers 95.3% of PF02130, 154.0 bits

Csac_1839 protein of unknown function UPF0054 (RefSeq) from Caldicellulosiruptor saccharolyticus DSM 8903
Aligns to 8:154 / 158 (93.0%), covers 96.9% of PF02130, 140.8 bits

SP_0967 putative metalloprotease (RefSeq) from Streptococcus pneumoniae TIGR4
Aligns to 10:160 / 165 (91.5%), covers 96.9% of PF02130, 138.3 bits

spr0869 Conserved hypothetical protein (NCBI ptt file) from Streptococcus pneumoniae R6
Aligns to 10:160 / 165 (91.5%), covers 96.9% of PF02130, 138.0 bits

YbeY / b0659 endoribonuclease YbeY from Escherichia coli K-12 substr. MG1655 (see 17 papers)
YBEY_ECOLI / P0A898 Endoribonuclease YbeY; EC 3.1.-.- from Escherichia coli (strain K12) (see 6 papers)
ybeY / MB|P0A898 putative metalloprotease ybeY from Escherichia coli K12 (see paper)
NP_415192 ssRNA-specific endoribonuclease; 16S rRNA 3' end maturation and quality control co-endoribonuclease working with RNase R; rRNA transcription antitermination factor from Escherichia coli str. K-12 substr. MG1655
b0659 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 15:144 / 155 (83.9%), covers 93.8% of PF02130, 133.8 bits

VC0960 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 13:143 / 154 (85.1%), covers 93.8% of PF02130, 133.3 bits

RPA0446 Protein of unknown function UPF0054 (NCBI) from Rhodopseudomonas palustris CGA009
Aligns to 42:177 / 190 (71.6%), covers 94.5% of PF02130, 132.8 bits

YBEY_HAEIN / P71335 Endoribonuclease YbeY; EC 3.1.-.- from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
NP_438177 metalloprotease from Haemophilus influenzae Rd KW20
HI0004 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 14:144 / 154 (85.1%), covers 93.0% of PF02130, 131.2 bits

ZMO0074 hypothetical protein (RefSeq) from Zymomonas mobilis subsp. mobilis ZM4
Aligns to 13:158 / 176 (83.0%), covers 96.9% of PF02130, 129.0 bits

Rv2367c hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 14:153 / 182 (76.9%), covers 89.1% of PF02130, 126.2 bits

NP_384513 hypothetical protein from Sinorhizobium meliloti 1021
SMc01113 CONSERVED HYPOTHETICAL PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 17:156 / 168 (83.3%), covers 95.3% of PF02130, 125.5 bits

PAM624 rRNA maturation RNase YbeY from Onion yellows phytoplasma OY-M
Aligns to 7:138 / 146 (90.4%), covers 81.2% of PF02130, 125.0 bits

DIP1717 Conserved hypothetical protein (NCBI) from Corynebacterium diphtheriae NCTC 13129
Aligns to 11:150 / 196 (71.4%), covers 89.8% of PF02130, 119.2 bits

PD1781 conserved hypothetical protein (NCBI ptt file) from Xylella fastidiosa Temecula1
Aligns to 19:151 / 161 (82.6%), covers 92.2% of PF02130, 118.5 bits

CJM1cam_0120 rRNA maturation RNase YbeY from Campylobacter jejuni
Aligns to 4:122 / 134 (88.8%), covers 82.8% of PF02130, 117.8 bits

Cj0121 hypothetical protein Cj0121 (NCBI ptt file) from Campylobacter jejuni subsp. jejuni NCTC 11168
Aligns to 4:122 / 135 (88.1%), covers 82.8% of PF02130, 117.8 bits

YBEY_THEMA / Q9X1J7 Endoribonuclease YbeY; EC 3.1.-.- from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (see paper)
TM1509 conserved hypothetical protein (NCBI ptt file) from Thermotoga maritima MSB8
Aligns to 9:133 / 150 (83.3%), covers 94.5% of PF02130, 117.0 bits

RP741 unknown (NCBI ptt file) from Rickettsia prowazekii str. Madrid E
Aligns to 27:174 / 180 (82.2%), covers 95.3% of PF02130, 112.7 bits

RSP_3598 Protein of unknown function UPF0054 (NCBI) from Rhodobacter sphaeroides 2.4.1
Aligns to 14:161 / 167 (88.6%), covers 93.8% of PF02130, 109.6 bits

YBEY_ARATH / Q8L5Z4 Endoribonuclease YBEY, chloroplastic; EC 3.1.-.- from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
NP_850072 haloacid dehalogenase-like hydrolase family protein from Arabidopsis thaliana
AT2G25870 haloacid dehalogenase-like hydrolase family protein (RefSeq) from Arabidopsis thaliana
Aligns to 140:271 / 584 (22.6%), covers 81.2% of PF02130, 107.8 bits

TTHA1045 hypothetical protein (NCBI) from Thermus thermophilus HB8
Aligns to 12:139 / 139 (92.1%), covers 88.3% of PF02130, 105.9 bits

YBEY_HUMAN / P58557 Endoribonuclease YbeY; EC 3.1.-.- from Homo sapiens (Human) (see paper)
Aligns to 11:148 / 167 (82.6%), covers 88.3% of PF02130, 104.9 bits

HP1160 conserved hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 6:128 / 140 (87.9%), covers 79.7% of PF02130, 103.6 bits

TWT283 unknown (NCBI ptt file) from Tropheryma whipplei str. Twist
Aligns to 14:145 / 171 (77.2%), covers 82.0% of PF02130, 98.8 bits

TP0650 conserved hypothetical protein (NCBI ptt file) from Treponema pallidum subsp. pallidum str. Nichols
Aligns to 19:148 / 160 (81.2%), covers 86.7% of PF02130, 98.6 bits

BPSL0672 unkown domain/putative metalloprotease fusion protein (RefSeq) from Burkholderia pseudomallei K96243
Aligns to 137:263 / 270 (47.0%), covers 95.3% of PF02130, 97.2 bits

CT422 possible metalloenzyme (NCBI ptt file) from Chlamydia trachomatis D/UW-3/CX
Aligns to 17:150 / 161 (83.2%), covers 93.0% of PF02130, 82.3 bits

CTL0681 hypothetical protein (RefSeq) from Chlamydia trachomatis 434/Bu
Aligns to 17:150 / 161 (83.2%), covers 93.0% of PF02130, 79.3 bits

CPn0509 predicted Metalloenzyme (NCBI ptt file) from Chlamydophila pneumoniae CWL029
CPn0509 endoribonuclease from Chlamydia pneumoniae CWL029
Aligns to 17:149 / 158 (84.2%), covers 89.1% of PF02130, 73.2 bits

YBEY_MYCGE / P47628 Endoribonuclease YbeY; EC 3.1.-.- from Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (see paper)
Aligns to 15:148 / 154 (87.0%), covers 80.5% of PF02130, 70.5 bits

PF3D7_0420200 holo-[acyl-carrier-protein] synthase, putative from Plasmodium falciparum 3D7
Aligns to 193:302 / 594 (18.5%), covers 55.5% of PF02130, 62.6 bits

XP_016883883 endoribonuclease YbeY isoform X5 from Homo sapiens
Aligns to 141:203 / 254 (24.8%), covers 35.2% of PF02130, 56.2 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory