PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF02130 (UPF0054)

PF02130.17 hits 34 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

YbeY / b0659 endoribonuclease YbeY from Escherichia coli K-12 substr. MG1655 (see 17 papers)
YBEY_ECOLI / P0A898 Endoribonuclease YbeY; EC 3.1.-.- from Escherichia coli (strain K12) (see 6 papers)
ybeY / MB|P0A898 putative metalloprotease ybeY from Escherichia coli K12 (see paper)
Aligns to 15:144 / 155 (83.9%), covers 93.8% of PF02130, 133.8 bits

YBEY_HAEIN / P71335 Endoribonuclease YbeY; EC 3.1.-.- from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
Aligns to 14:144 / 154 (85.1%), covers 93.0% of PF02130, 131.2 bits

YBEY_THEMA / Q9X1J7 Endoribonuclease YbeY; EC 3.1.-.- from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (see paper)
Aligns to 9:133 / 150 (83.3%), covers 94.5% of PF02130, 117.0 bits

YBEY_ARATH / Q8L5Z4 Endoribonuclease YBEY, chloroplastic; EC 3.1.-.- from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 140:271 / 584 (22.6%), covers 81.2% of PF02130, 107.8 bits

YBEY_HUMAN / P58557 Endoribonuclease YbeY; EC 3.1.-.- from Homo sapiens (Human) (see paper)
Aligns to 11:148 / 167 (82.6%), covers 88.3% of PF02130, 104.9 bits

YBEY_MYCGE / P47628 Endoribonuclease YbeY; EC 3.1.-.- from Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (see paper)
Aligns to 15:148 / 154 (87.0%), covers 80.5% of PF02130, 70.5 bits

Or search for genetic data about PF02130 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory