PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF02622 (DUF179)

PF02622.15 hits 16 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VC0467 hypothetical protein (RefSeq) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 12:174 / 187 (87.2%), covers 100.0% of PF02622, 176.2 bits

CV_3909 conserved hypothetical protein (NCBI) from Chromobacterium violaceum ATCC 12472
Aligns to 21:179 / 192 (82.8%), covers 100.0% of PF02622, 168.8 bits

BCAL3142 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 19:179 / 192 (83.9%), covers 100.0% of PF02622, 168.4 bits

YqgE / b2948 DUF179 domain-containing protein YqgE from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b2948 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 12:174 / 187 (87.2%), covers 100.0% of PF02622, 168.3 bits

SPO0296 YqgE/AlgH family protein from Ruegeria pomeroyi DSS-3
Aligns to 12:171 / 184 (87.0%), covers 100.0% of PF02622, 166.6 bits

STM3096 putative transcriptional regulator (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 12:174 / 187 (87.2%), covers 100.0% of PF02622, 164.1 bits

PA0405 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 18:176 / 189 (84.1%), covers 100.0% of PF02622, 160.5 bits

lpg0586 transcriptional regulator (NCBI) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
lpp0636 hypothetical protein (NCBI) from Legionella pneumophila str. Paris
Aligns to 16:174 / 187 (85.0%), covers 96.9% of PF02622, 159.9 bits

PD1276 transcriptional regulator (NCBI ptt file) from Xylella fastidiosa Temecula1
Aligns to 17:175 / 188 (84.6%), covers 100.0% of PF02622, 157.1 bits

SMc00019 CONSERVED HYPOTHETICAL PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 24:188 / 201 (82.1%), covers 100.0% of PF02622, 156.8 bits

HI0304 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 13:172 / 186 (86.0%), covers 99.4% of PF02622, 154.2 bits

RSP_0999 hypothetical protein (NCBI) from Rhodobacter sphaeroides 2.4.1
Aligns to 12:171 / 184 (87.0%), covers 100.0% of PF02622, 153.8 bits

BP0319 putative transcriptional regulator (NCBI) from Bordetella pertussis Tohama I
Aligns to 31:188 / 201 (78.6%), covers 100.0% of PF02622, 151.3 bits

NMB1336 hypothetical protein (NCBI) from Neisseria meningitidis MC58
Aligns to 12:169 / 182 (86.8%), covers 100.0% of PF02622, 148.1 bits

FTL_1216 hypothetical protein (NCBI) from Francisella tularensis subsp. holarctica
Aligns to 14:177 / 194 (84.5%), covers 98.8% of PF02622, 137.8 bits

wcw_1223 YqgE/AlgH family protein from Waddlia chondrophila WSU 86-1044
Aligns to 19:173 / 189 (82.0%), covers 100.0% of PF02622, 134.0 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory