PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF02696 (UPF0061)

PF02696.14 hits 18 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SELO_YEAST / Q08968 Protein adenylyltransferase SelO, mitochondrial; Selenoprotein O; SelO; EC 2.7.7.- from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 5 papers)
YPL222W Fmp40p (RefSeq) from Saccharomyces cerevisiae
Aligns to 48:649 / 688 (87.5%), covers 99.6% of PF02696, 561.1 bits

c2102 Hypothetical protein ydiU (NCBI ptt file) from Escherichia coli CFT073
Aligns to 1:451 / 478 (94.4%), covers 99.1% of PF02696, 523.7 bits

YdiU / b1706 UPF0061 family protein YdiU from Escherichia coli K-12 substr. MG1655 (see 3 papers)
SELO_ECOLI / P77649 Protein adenylyltransferase SelO; Selenoprotein O homolog; SelO; EC 2.7.7.-; EC 2.7.7.n1 from Escherichia coli (strain K12) (see paper)
ydiU / RF|NP_416221 UPF0061 protein ydiU from Escherichia coli K12 (see paper)
b1706 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:451 / 478 (94.4%), covers 99.1% of PF02696, 521.6 bits

SELO_PSESM / Q87VB1 Protein adenylyltransferase SelO; EC 2.7.7.-; EC 2.7.7.n1 from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) (see paper)
Aligns to 3:458 / 487 (93.6%), covers 98.9% of PF02696, 511.2 bits

PA5023 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 3:457 / 486 (93.6%), covers 98.9% of PF02696, 502.9 bits

PBPRA2020 hypothetical protein (NCBI) from Photobacterium profundum SS9
Aligns to 11:493 / 522 (92.5%), covers 99.4% of PF02696, 470.7 bits

Galf_2424 YdiU family protein from Gallionella capsiferriformans ES-2
Aligns to 18:486 / 518 (90.5%), covers 97.6% of PF02696, 454.4 bits

NP_196807 selenoprotein O from Arabidopsis thaliana
AT5G13030 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 114:601 / 633 (77.1%), covers 96.2% of PF02696, 450.8 bits

TTHERM_00852990 selenoprotein O from Tetrahymena thermophila SB210
Aligns to 38:602 / 634 (89.1%), covers 97.2% of PF02696, 439.3 bits

An07g10280 YdiU domain protein from Aspergillus niger CBS 513.88
Aligns to 68:603 / 637 (84.1%), covers 95.9% of PF02696, 433.7 bits

SPAC20G4.05c UPF0061 family protein (RefSeq) from Schizosaccharomyces pombe
Aligns to 35:534 / 568 (88.0%), covers 98.3% of PF02696, 423.4 bits

KT99_20194 hypothetical protein (RefSeq) from Shewanella benthica KT99
Aligns to 7:484 / 513 (93.2%), covers 98.7% of PF02696, 420.8 bits

BP1090 conserved hypothetical protein (NCBI) from Bordetella pertussis Tohama I
Aligns to 5:458 / 487 (93.2%), covers 98.1% of PF02696, 410.7 bits

SELO_HUMAN / Q9BVL4 Protein adenylyltransferase SelO, mitochondrial; Selenoprotein O; SelO; EC 2.7.7.-; EC 2.7.7.n1 from Homo sapiens (Human) (see 2 papers)
NP_113642 selenoprotein O from Homo sapiens
Aligns to 76:624 / 669 (82.1%), covers 95.5% of PF02696, 406.6 bits

RSP_2375 hypothetical protein (NCBI) from Rhodobacter sphaeroides 2.4.1
Aligns to 1:451 / 481 (93.8%), covers 98.7% of PF02696, 391.7 bits

AFLA_022590 YdiU domain protein from Aspergillus flavus NRRL3357
Aligns to 36:488 / 522 (86.8%), covers 80.8% of PF02696, 365.1 bits

thalar_00489 YdiU family protein from Litoreibacter arenae DSM 19593
Aligns to 2:442 / 471 (93.6%), covers 98.1% of PF02696, 355.2 bits

CC3334 conserved hypothetical protein, interruption (NCBI ptt file) from Caulobacter crescentus CB15
Aligns to 8:160 / 160 (95.6%), covers 30.3% of PF02696, 163.1 bits

Or search for genetic data about PF02696 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory