PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF02698 (DUF218)

PF02698.17 hits 33 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SAUSA300_2304 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus USA300_FPR3757
Aligns to 148:300 / 322 (47.5%), covers 80.9% of PF02698, 112.6 bits

MXAN_5362 hypothetical protein (NCBI) from Myxococcus xanthus DK 1622
Aligns to 79:246 / 258 (65.1%), covers 99.2% of PF02698, 105.5 bits

EF1366 conserved hypothetical protein (NCBI ptt file) from Enterococcus faecalis V583
Aligns to 177:328 / 359 (42.3%), covers 99.2% of PF02698, 104.8 bits

lmo2442 lmo2442 (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 39:180 / 189 (75.1%), covers 98.5% of PF02698, 100.3 bits

SMU_302 hypothetical protein from Streptococcus mutans UA159
Aligns to 163:311 / 337 (44.2%), covers 99.2% of PF02698, 99.8 bits

lmo1004 conserved hypothetical protein (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 164:313 / 344 (43.6%), covers 99.2% of PF02698, 98.8 bits

c1061 Hypothetical protein ycbC (NCBI ptt file) from Escherichia coli CFT073
Aligns to 80:243 / 259 (63.3%), covers 87.8% of PF02698, 97.7 bits

ElyC / b0920 envelope biogenesis factor from Escherichia coli K-12 substr. MG1655 (see paper)
ELYC_ECOLI / P0AB01 Envelope biogenesis factor ElyC; Elevated frequency of lysis from Escherichia coli (strain K12) (see paper)
Aligns to 80:243 / 259 (63.3%), covers 87.8% of PF02698, 97.7 bits

BPSL1927 putative exported protein (NCBI) from Burkholderia pseudomallei K96243
Aligns to 66:227 / 240 (67.5%), covers 99.2% of PF02698, 94.7 bits

SCO2472 integral membrane protein (NCBI) from Streptomyces coelicolor A3(2)
Aligns to 57:212 / 228 (68.4%), covers 80.2% of PF02698, 94.3 bits

PM0506 unknown (NCBI ptt file) from Pasteurella multocida subsp. multocida str. Pm70
Aligns to 79:242 / 247 (66.4%), covers 100.0% of PF02698, 91.8 bits

HI1701 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 78:239 / 247 (65.6%), covers 100.0% of PF02698, 87.7 bits

lpg2628 membrane protein (NCBI) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Aligns to 80:242 / 250 (65.2%), covers 99.2% of PF02698, 84.6 bits

VP1152 conserved hypothetical protein (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Aligns to 24:186 / 212 (76.9%), covers 71.8% of PF02698, 81.2 bits

BMEII0841 hypothetical protein (NCBI ptt file) from Brucella melitensis 16M
Aligns to 9:145 / 180 (76.1%), covers 99.2% of PF02698, 80.6 bits

BRA0426 Bme2 protein (NCBI) from Brucella suis 1330
Aligns to 34:170 / 205 (66.8%), covers 98.5% of PF02698, 80.1 bits

AOLE_07010 YdcF family protein from Acinetobacter oleivorans DR1
Aligns to 208:358 / 373 (40.5%), covers 98.5% of PF02698, 77.6 bits

SEN3064 hypothetical protein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 59:207 / 230 (64.8%), covers 85.5% of PF02698, 77.0 bits

VC1186 sanA protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 71:220 / 254 (59.1%), covers 96.9% of PF02698, 74.9 bits

SCO4629 hypothetical protein (NCBI) from Streptomyces coelicolor A3(2)
Aligns to 27:184 / 221 (71.5%), covers 77.1% of PF02698, 74.8 bits

YgjQ / b3086 DUF218 domain-containing protein YgjQ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
Aligns to 32:210 / 230 (77.8%), covers 83.2% of PF02698, 72.4 bits

S3333 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 50:210 / 230 (70.0%), covers 83.2% of PF02698, 70.6 bits

BMEI2016 hypothetical protein (NCBI ptt file) from Brucella melitensis 16M
Aligns to 26:170 / 211 (68.7%), covers 99.2% of PF02698, 70.4 bits

SPA0101 hypothetical protein (NCBI) from Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Aligns to 72:165 / 165 (57.0%), covers 61.8% of PF02698, 68.3 bits

YeiF / b2144 DUF218 domain-containing protein SanA from Escherichia coli K-12 substr. MG1655 (see 5 papers)
sanA protein SanA from Escherichia coli K12 (see paper)
Aligns to 46:199 / 239 (64.4%), covers 81.7% of PF02698, 64.9 bits

SC2201 vancomycin sensitivity (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 67:221 / 260 (59.6%), covers 82.4% of PF02698, 63.5 bits

YdcF / b1414 DUF218 domain-containing protein YdcF from Escherichia coli K-12 substr. MG1655 (see 2 papers)
YDCF_ECOLI / P34209 Protein YdcF from Escherichia coli (strain K12) (see paper)
ydcF / ECOCYC|EG12110-MONOMER protein ydcF from Escherichia coli K12 (see 6 papers)
b1414 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 15:214 / 266 (75.2%), covers 79.4% of PF02698, 58.4 bits

SeKA_A1094 YdcF family protein from Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Aligns to 38:212 / 266 (65.8%), covers 78.6% of PF02698, 56.7 bits

PA2066 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 25:168 / 212 (67.9%), covers 75.6% of PF02698, 54.1 bits

HI1262 SanA (NCBI) from Haemophilus influenzae Rd KW20
Aligns to 59:204 / 226 (64.6%), covers 86.3% of PF02698, 52.0 bits

SMc00715 HYPOTHETICAL TRANSMEMBRANE PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 62:202 / 232 (60.8%), covers 97.7% of PF02698, 50.8 bits

ELI_11430 hypothetical protein (NCBI) from Erythrobacter litoralis HTCC2594
Aligns to 34:171 / 176 (78.4%), covers 83.2% of PF02698, 42.5 bits

cg3330 putative secreted protein (RefSeq) from Corynebacterium glutamicum ATCC 13032
Aligns to 45:177 / 191 (69.6%), covers 98.5% of PF02698, 33.8 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory