PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF03235 (DUF262)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

PF03235 hits 55 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CjjRM3420_1536 DUF262 domain-containing protein from Campylobacter jejuni subsp. jejuni str. RM3420
Aligns to 13:241 / 555 (41.3%), covers 100.0% of PF03235, 143.4 bits

c5426 Conserved hypothetical protein from Escherichia coli CFT073
Aligns to 15:226 / 557 (38.1%), covers 100.0% of PF03235, 142.1 bits

HP1397 hypothetical protein from Helicobacter pylori 26695
Aligns to 11:227 / 271 (80.1%), covers 98.5% of PF03235, 135.8 bits

D7FDN0 DUF262 domain-containing protein from Helicobacter pylori (strain B8)
HPB8_729 DUF262 and DUF1524 domain-containing protein from Helicobacter pylori B8
Aligns to 8:220 / 687 (31.0%), covers 98.5% of PF03235, 135.4 bits

jhp0462 putative from Helicobacter pylori J99
Aligns to 8:217 / 706 (29.7%), covers 98.0% of PF03235, 135.3 bits

K747_06625 DUF262 and DUF1524 domain-containing protein from Helicobacter pylori UM032
Aligns to 7:218 / 689 (30.8%), covers 97.5% of PF03235, 135.1 bits

NMA2230 hypothetical protein from Neisseria meningitidis Z2491
Aligns to 11:243 / 571 (40.8%), covers 98.0% of PF03235, 133.0 bits

NP_463839 similar to unknown protein from Listeria monocytogenes EGD-e
Aligns to 8:239 / 553 (42.0%), covers 95.0% of PF03235, 129.0 bits

HPYLSS1_01469 DUF262 domain-containing protein from Helicobacter pylori SS1
Aligns to 7:242 / 584 (40.4%), covers 97.5% of PF03235, 127.6 bits

cg0841 hypothetical protein from Corynebacterium glutamicum ATCC 13032
Aligns to 8:222 / 811 (26.5%), covers 99.0% of PF03235, 127.0 bits

jhp1301 putative from Helicobacter pylori J99
Aligns to 10:235 / 314 (72.0%), covers 97.5% of PF03235, 126.1 bits

HP0426 hypothetical protein from Helicobacter pylori 26695
HP1409 hypothetical protein from Helicobacter pylori 26695
Aligns to 12:236 / 578 (38.9%), covers 98.5% of PF03235, 125.9 bits

BCAL1172 hypothetical protein from Burkholderia cenocepacia J2315
Aligns to 10:234 / 590 (38.1%), covers 95.0% of PF03235, 125.5 bits

SCO5329 hypothetical protein from Streptomyces coelicolor A3(2)
Aligns to 12:239 / 565 (40.4%), covers 99.0% of PF03235, 125.3 bits

jhp1430 putative from Helicobacter pylori J99
Aligns to 12:233 / 282 (78.7%), covers 98.5% of PF03235, 124.1 bits

TM0991 hypothetical protein from Thermotoga maritima MSB8
Aligns to 13:230 / 584 (37.3%), covers 97.5% of PF03235, 121.9 bits

CTN_1586 hypothetical protein from Thermotoga neapolitana DSM 4359
Aligns to 13:230 / 584 (37.3%), covers 97.5% of PF03235, 121.4 bits

jhp0174 putative from Helicobacter pylori J99
Aligns to 5:214 / 567 (37.0%), covers 99.5% of PF03235, 121.3 bits

TRQ2_1804 hypothetical protein from Thermotoga sp. RQ2
Aligns to 13:230 / 584 (37.3%), covers 97.5% of PF03235, 120.7 bits

DDV75_00040 DUF262 domain-containing protein from Campylobacter jejuni
Aligns to 11:247 / 563 (42.1%), covers 99.0% of PF03235, 120.7 bits

B8F899 DUF262 domain-containing protein from Glaesserella parasuis serovar 5 (strain SH0165)
Aligns to 8:222 / 680 (31.6%), covers 99.5% of PF03235, 120.4 bits

Cj0008 hypothetical protein Cj0008 from Campylobacter jejuni subsp. jejuni NCTC 11168
CJSA_0008, DDR89_00040 DUF262 domain-containing protein from Campylobacter jejuni subsp. jejuni IA3902
Aligns to 10:260 / 583 (43.1%), covers 98.0% of PF03235, 119.8 bits

BC_0944 DUF262 domain-containing protein from Bacillus cereus ATCC 14579
Aligns to 13:221 / 527 (39.7%), covers 99.0% of PF03235, 118.8 bits

YPO3437 conserved hypothetical protein from Yersinia pestis CO92
Aligns to 23:241 / 636 (34.4%), covers 99.5% of PF03235, 118.4 bits

EF62_1081 DUF262 domain-containing protein from Enterococcus faecalis 62
Aligns to 12:265 / 583 (43.6%), covers 99.5% of PF03235, 117.4 bits

HPF57_0653 DUF262 domain-containing protein from Helicobacter pylori F57
Aligns to 8:218 / 682 (30.9%), covers 96.0% of PF03235, 115.3 bits

jhp0955 putative from Helicobacter pylori J99
Aligns to 5:209 / 217 (94.5%), covers 95.0% of PF03235, 114.8 bits

jhp0572 putative from Helicobacter pylori J99
Aligns to 8:218 / 683 (30.9%), covers 96.0% of PF03235, 114.1 bits

alr4229 hypothetical protein from Nostoc sp. PCC 7120
Aligns to 40:224 / 393 (47.1%), covers 98.5% of PF03235, 113.3 bits

VC1766 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 14:230 / 663 (32.7%), covers 100.0% of PF03235, 112.4 bits

HPG27_887 hypothetical protein from Helicobacter pylori G27
Aligns to 9:263 / 456 (55.9%), covers 99.0% of PF03235, 111.7 bits

jhp0873 putative from Helicobacter pylori J99
Aligns to 9:264 / 291 (88.0%), covers 98.5% of PF03235, 111.7 bits

HP0629 hypothetical protein from Helicobacter pylori 26695
Aligns to 8:217 / 681 (30.8%), covers 95.5% of PF03235, 107.4 bits

UU527 conserved hypothetical from Ureaplasma parvum serovar 3 str. ATCC 700970
Aligns to 307:527 / 971 (22.8%), covers 98.5% of PF03235, 107.1 bits

CDQ83_18880 DUF262 domain-containing protein from Pseudoclostridium thermosuccinogenes
Aligns to 11:226 / 611 (35.4%), covers 98.5% of PF03235, 105.6 bits

BF9343_1755 DUF262 domain-containing protein from Bacteroides fragilis NCTC 9343
Aligns to 11:219 / 551 (37.9%), covers 98.5% of PF03235, 103.3 bits

MW0374 hypothetical protein from Staphylococcus aureus subsp. aureus MW2
Aligns to 8:213 / 608 (33.9%), covers 93.5% of PF03235, 102.4 bits

D7FGE9 DUF262 domain-containing protein from Helicobacter pylori (strain B8)
Aligns to 11:212 / 217 (93.1%), covers 81.4% of PF03235, 100.7 bits

ACG06_19220 DUF262 domain-containing protein from Pseudomonas aeruginosa
Aligns to 7:222 / 564 (38.3%), covers 99.0% of PF03235, 98.6 bits

Z5949 orf; conserved hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 8:93 / 94 (91.5%), covers 38.7% of PF03235, 97.2 bits

PFLU4242 hypothetical protein from Pseudomonas fluorescens SBW25
Aligns to 8:218 / 527 (40.0%), covers 98.0% of PF03235, 97.1 bits

DIP1102 Conserved hypothetical protein from Corynebacterium diphtheriae NCTC 13129
Aligns to 10:254 / 602 (40.7%), covers 98.0% of PF03235, 89.9 bits

alr1266 hypothetical protein from Nostoc sp. PCC 7120
Aligns to 10:181 / 599 (28.7%), covers 94.0% of PF03235, 89.1 bits

SCO6638 hypothetical protein from Streptomyces coelicolor A3(2)
Aligns to 9:254 / 605 (40.7%), covers 99.5% of PF03235, 87.7 bits

HP0513 hypothetical protein from Helicobacter pylori 26695
Aligns to 1:173 / 658 (26.3%), covers 80.4% of PF03235, 83.9 bits

VCA0199 hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 259:412 / 638 (24.1%), covers 96.5% of PF03235, 83.2 bits

orf2 / A0A023I190 6-hydroxypseudooxynicotine oxidase from Shinella sp. (strain HZN7) (see paper)
Aligns to 16:235 / 562 (39.1%), covers 98.0% of PF03235, 81.2 bits

alr5156 hypothetical protein from Nostoc sp. PCC 7120
Aligns to 10:164 / 168 (92.3%), covers 52.8% of PF03235, 74.0 bits

BanLI Type II restriction enzyme recognizing RTCAGG, ?; CCTGAY from Bifidobacterium animalis subsp. lactis CNCM I-2494
Aligns to 23:159 / 372 (36.8%), covers 93.5% of PF03235, 71.6 bits

STM14_2479, STMUK_2024 DUF262 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
Aligns to 27:163 / 171 (80.1%), covers 31.7% of PF03235, 65.0 bits

AYJ09_01105 DUF262 domain-containing protein from Candidatus Liberibacter solanacearum
Aligns to 10:155 / 361 (40.4%), covers 94.0% of PF03235, 63.0 bits

HP0938 hypothetical protein from Helicobacter pylori 26695
Aligns to 9:81 / 115 (63.5%), covers 24.6% of PF03235, 50.0 bits

D7FDB0 DUF262 domain-containing protein from Helicobacter pylori (strain B8)
Aligns to 4:81 / 115 (67.8%), covers 24.6% of PF03235, 49.5 bits

Z5950 orf; conserved hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 6:121 / 452 (25.7%), covers 38.2% of PF03235, 47.5 bits

HP0187 hypothetical protein from Helicobacter pylori 26695
Aligns to 1:93 / 95 (97.9%), covers 35.2% of PF03235, 44.8 bits

Or search for genetic data about PF03235 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory