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Family Search for PF03478 (DUF295)

PF03478.18 hits 22 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AT4G25920 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 309:354 / 390 (11.8%), covers 96.4% of PF03478, 52.2 bits

AT5G46140 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 212:257 / 289 (15.9%), covers 96.4% of PF03478, 50.5 bits

AT2G04830 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 9:73 / 100 (65.0%), covers 100.0% of PF03478, 49.3 bits

FB111_ARATH / Q3EBY8 F-box protein At2g17690; Protein SUPPRESSOR OF DRM1 DRM2 CMT3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_179360 ascorbic acid mannose pathway regulator, putative (DUF295) from Arabidopsis thaliana
AT2G17690 SDC (SUPPRESSOR OF DRM1 DRM2 CMT3) (RefSeq) from Arabidopsis thaliana
Aligns to 349:405 / 421 (13.5%), covers 96.4% of PF03478, 46.1 bits

umc1541 uncharacterized protein LOC100381664 from Zea mays
Aligns to 378:430 / 495 (10.7%), covers 96.4% of PF03478, 44.5 bits

AT5G55440 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 288:343 / 365 (15.3%), covers 72.7% of PF03478, 39.7 bits

SKI23_ARATH / Q3EBZ2 F-box protein SKIP23; SKP1-interacting partner 23 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 306:365 / 407 (14.7%), covers 96.4% of PF03478, 38.9 bits

AT1G65760 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 288:346 / 362 (16.3%), covers 78.2% of PF03478, 37.6 bits

AT1G05540 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 293:337 / 367 (12.3%), covers 96.4% of PF03478, 36.5 bits

AT1G65740 F-box family protein (RefSeq) from Arabidopsis thaliana
NP_176751 ascorbic acid mannose pathway regulator (DUF295) from Arabidopsis thaliana
Aligns to 298:356 / 371 (15.9%), covers 74.5% of PF03478, 36.2 bits

AT1G64840 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 287:353 / 384 (17.4%), covers 74.5% of PF03478, 35.5 bits

AT1G65770 F-box family protein (RefSeq) from Arabidopsis thaliana
NP_176753 ascorbic acid mannose pathway regulator 1 from Arabidopsis thaliana
Aligns to 286:339 / 360 (15.0%), covers 92.7% of PF03478, 35.1 bits

AT4G22170 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 280:332 / 363 (14.6%), covers 100.0% of PF03478, 34.4 bits

KIB3_ARATH / Q9ZW91 F-box protein KIB3; Protein KINK SUPPRESSED IN BZR1-1D 3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 299:357 / 450 (13.1%), covers 92.7% of PF03478, 32.5 bits

AT4G22165 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 279:332 / 363 (14.9%), covers 100.0% of PF03478, 31.9 bits

AT2G24250 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 282:348 / 374 (17.9%), covers 94.5% of PF03478, 31.8 bits

AT2G16290 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 318:392 / 415 (18.1%), covers 96.4% of PF03478, 30.7 bits

KIB4_ARATH / Q9SRV0 F-box protein KIB4; Protein KINK SUPPRESSED IN BZR1-1D 4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 303:360 / 393 (14.8%), covers 94.5% of PF03478, 30.3 bits

NP_565302 F-box only protein (DUF295) from Arabidopsis thaliana
Aligns to 318:369 / 395 (13.2%), covers 100.0% of PF03478, 28.9 bits

AT4G22180 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 319:370 / 402 (12.9%), covers 69.1% of PF03478, 28.1 bits

KIB2_ARATH / Q9SU04 F-box protein KIB2; Protein KINK SUPPRESSED IN BZR1-1D 2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G12820 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 353:406 / 442 (12.2%), covers 90.9% of PF03478, 27.5 bits

AT3G03720 CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transmembrane transporter (RefSeq) from Arabidopsis thaliana
Aligns to 131:182 / 801 (6.5%), covers 70.9% of PF03478, 23.9 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory