PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF03479 (DUF296)

PF03479.15 hits 42 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AHL19_ARATH / Q9SR17 AT-hook motif nuclear-localized protein 19 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
NP_566232 AT-hook motif nuclear-localized protein 19 from Arabidopsis thaliana
Aligns to 108:229 / 315 (38.7%), covers 99.1% of PF03479, 105.8 bits

AHL22_ARATH / O22130 AT-hook motif nuclear-localized protein 22 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
NP_182067 AT-hook motif nuclear-localized protein 22 from Arabidopsis thaliana
AT2G45430 DNA-binding protein-related (RefSeq) from Arabidopsis thaliana
Aligns to 117:234 / 317 (37.2%), covers 98.1% of PF03479, 103.1 bits

AHL21_ARATH / O82166 AT-hook motif nuclear-localized protein 21; Protein GIANT KILLER from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
NP_181070 Putative AT-hook DNA-binding family protein from Arabidopsis thaliana
AT2G35270 DNA-binding protein-related (RefSeq) from Arabidopsis thaliana
Aligns to 106:219 / 285 (40.0%), covers 100.0% of PF03479, 102.9 bits

AHL26_ARATH / Q9SZ70 AT-hook motif nuclear-localized protein 26 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 146:260 / 339 (33.9%), covers 100.0% of PF03479, 102.4 bits

AHL24_ARATH / O49662 AT-hook motif nuclear-localized protein 24 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 133:249 / 324 (36.1%), covers 100.0% of PF03479, 102.2 bits

AHL20_ARATH / Q8GWQ2 AT-hook motif nuclear-localized protein 20 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 95:208 / 281 (40.6%), covers 100.0% of PF03479, 100.5 bits

XP_015641725 AT-hook motif nuclear-localized protein 18 from Oryza sativa Japonica Group
Aligns to 139:253 / 328 (35.1%), covers 99.1% of PF03479, 100.2 bits

AHL23_ARATH / O23620 AT-hook motif nuclear-localized protein 23 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G17800 DNA-binding protein-related (RefSeq) from Arabidopsis thaliana
Aligns to 110:223 / 292 (39.0%), covers 100.0% of PF03479, 100.1 bits

AHL18_ARATH / Q9LZX7 AT-hook motif nuclear-localized protein 18 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 87:198 / 265 (42.3%), covers 99.1% of PF03479, 99.7 bits

AHL7_ARATH / Q4V3E0 AT-hook motif nuclear-localized protein 7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 124:240 / 318 (36.8%), covers 98.1% of PF03479, 99.7 bits

AHL1_ARATH / Q8VYJ2 AT-hook motif nuclear-localized protein 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT4G12080 DNA-binding family protein (RefSeq) from Arabidopsis thaliana
Aligns to 171:287 / 356 (32.9%), covers 98.1% of PF03479, 99.4 bits

AHL13_ARATH / Q940I0 AT-hook motif nuclear-localized protein 13; AT-hook protein 2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 222:340 / 439 (27.1%), covers 99.1% of PF03479, 98.3 bits

AHL4_ARATH / Q9FHM5 AT-hook motif nuclear-localized protein 4 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT5G51590 DNA-binding protein-related (RefSeq) from Arabidopsis thaliana
NP_199972 AT hook motif DNA-binding family protein from Arabidopsis thaliana
Aligns to 179:295 / 419 (27.9%), covers 98.1% of PF03479, 96.0 bits

AHL2_ARATH / O49658 AT-hook motif nuclear-localized protein 2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G22770 DNA-binding family protein (RefSeq) from Arabidopsis thaliana
Aligns to 151:267 / 334 (35.0%), covers 98.1% of PF03479, 95.2 bits

AHL10_ARATH / O22812 AT-hook motif nuclear-localized protein 10; AT-hook protein 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 164:280 / 351 (33.3%), covers 98.1% of PF03479, 94.1 bits

AHL27_ARATH / Q9S7C9 AT-hook motif nuclear-localized protein 27; DNA-binding protein ESCAROLA; Protein ORESARA 7 from Arabidopsis thaliana (Mouse-ear cress) (see 6 papers)
NP_173514 Putative AT-hook DNA-binding family protein from Arabidopsis thaliana
Aligns to 114:236 / 311 (39.5%), covers 100.0% of PF03479, 94.0 bits

AHL3_ARATH / Q9SB31 AT-hook motif nuclear-localized protein 3 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT4G25320 DNA-binding protein-related (RefSeq) from Arabidopsis thaliana
NP_194262 AT hook motif DNA-binding family protein from Arabidopsis thaliana
Aligns to 167:283 / 404 (29.0%), covers 98.1% of PF03479, 93.6 bits

AHL16_ARATH / Q9SJG4 AT-hook motif nuclear-localized protein 16; Protein TRANSPOSABLE ELEMENT SILENCING VIA AT-HOOK; Protein TEK from Arabidopsis thaliana (Mouse-ear cress) (see 6 papers)
AT2G42940 DNA-binding family protein (RefSeq) from Arabidopsis thaliana
NP_181822 Putative AT-hook DNA-binding family protein from Arabidopsis thaliana
Aligns to 81:194 / 257 (44.4%), covers 96.3% of PF03479, 93.2 bits

NP_001159201 AT-hook transcription regulator from Zea mays
Aligns to 138:251 / 341 (33.4%), covers 98.1% of PF03479, 92.3 bits

LOC108209748 AT-hook motif nuclear-localized protein 5-like from Daucus carota subsp. sativus
Aligns to 161:276 / 345 (33.6%), covers 99.1% of PF03479, 91.8 bits

VCA0587 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 3:111 / 130 (83.8%), covers 95.3% of PF03479, 91.7 bits

AHL17_ARATH / Q9LTA2 AT-hook motif nuclear-localized protein 17 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G49700 DNA-binding protein-related (RefSeq) from Arabidopsis thaliana
Aligns to 84:204 / 276 (43.8%), covers 99.1% of PF03479, 91.5 bits

AHL29_ARATH / Q9C9K7 AT-hook motif nuclear-localized protein 29; Protein SUPPRESSOR OF PHYB-4#3 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
NP_177776 Putative AT-hook DNA-binding family protein from Arabidopsis thaliana
Aligns to 100:222 / 302 (40.7%), covers 100.0% of PF03479, 91.4 bits

AT3G04590 DNA-binding family protein (RefSeq) from Arabidopsis thaliana
Aligns to 172:284 / 309 (36.6%), covers 99.1% of PF03479, 90.7 bits

AHL15_ARATH / Q9M2S3 AT-hook motif nuclear-localized protein 15; AT-hook protein of GA feedback 2 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT3G55560 AGF2 (AT-hook protein of GA feedback 2) (RefSeq) from Arabidopsis thaliana
Aligns to 116:230 / 310 (37.1%), covers 97.2% of PF03479, 90.5 bits

LOC108210904 AT-hook motif nuclear-localized protein 28-like from Daucus carota subsp. sativus
Aligns to 97:207 / 271 (41.0%), covers 98.1% of PF03479, 90.4 bits

AHL8_ARATH / Q9FIR1 AT-hook motif nuclear-localized protein 8 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 181:297 / 386 (30.3%), covers 99.1% of PF03479, 90.3 bits

AHL9_ARATH / O80834 AT-hook motif nuclear-localized protein 9 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 163:278 / 348 (33.3%), covers 98.1% of PF03479, 90.3 bits

AHL6_ARATH / Q9LVB0 AT-hook motif nuclear-localized protein 6 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 161:276 / 404 (28.7%), covers 97.2% of PF03479, 90.2 bits

AHL25_ARATH / Q6DBQ1 AT-hook motif nuclear-localized protein 25; AT-hook protein of GA feedback 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
NP_195265 AT-hook protein of GA feedback 1 from Arabidopsis thaliana
AT4G35390 AGF1 (AT-hook protein of GA feedback 1); transcription factor (RefSeq) from Arabidopsis thaliana
Aligns to 91:206 / 299 (38.8%), covers 99.1% of PF03479, 89.9 bits

AHL14_ARATH / A1L4X7 AT-hook motif nuclear-localized protein 14 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 172:284 / 411 (27.5%), covers 99.1% of PF03479, 89.8 bits

Z4267 orf; hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 13:121 / 143 (76.2%), covers 99.1% of PF03479, 87.9 bits

AHL5_ARATH / Q8GXB3 AT-hook motif nuclear-localized protein 5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 178:293 / 378 (30.7%), covers 98.1% of PF03479, 87.7 bits

XP_003590926 AT-hook motif nuclear-localized protein 14 from Medicago truncatula
Aligns to 110:223 / 329 (34.7%), covers 97.2% of PF03479, 85.9 bits

AHL28_ARATH / Q9M9R4 AT-hook motif nuclear-localized protein 28 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 31:151 / 206 (58.7%), covers 99.1% of PF03479, 83.9 bits

AHL11_ARATH / Q8L7L5 AT-hook motif nuclear-localized protein 11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G61310 DNA-binding family protein (RefSeq) from Arabidopsis thaliana
Aligns to 165:280 / 354 (32.8%), covers 98.1% of PF03479, 83.7 bits

AHL12_ARATH / Q8LPN5 AT-hook motif nuclear-localized protein 12 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G63480 DNA-binding family protein (RefSeq) from Arabidopsis thaliana
Aligns to 161:276 / 361 (32.1%), covers 98.1% of PF03479, 81.0 bits

SA0649 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
Aligns to 8:121 / 140 (81.4%), covers 95.3% of PF03479, 76.1 bits

CPM_0795 DUF296 domain-containing protein from Cuniculiplasma divulgatum
Aligns to 44:155 / 174 (64.4%), covers 95.3% of PF03479, 74.7 bits

AT2G36560 DNA-binding protein-related (RefSeq) from Arabidopsis thaliana
Aligns to 106:224 / 574 (20.7%), covers 97.2% of PF03479, 74.3 bits

SYNW0765 conserved hypothetical protein (VIMSS) from Synechococcus sp. WH 8102
Aligns to 2:109 / 202 (53.5%), covers 98.1% of PF03479, 69.5 bits

SMc00259 hypothetical protein (RefSeq) from Sinorhizobium meliloti 1021
Aligns to 178:285 / 285 (37.9%), covers 96.3% of PF03479, 47.8 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory