PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF03661 (UPF0121)

PF03661.13 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q9CR67 Transmembrane protein 33 from Mus musculus
NP_001272381 transmembrane protein 33 isoform 1 from Mus musculus
Aligns to 7:245 / 247 (96.8%), covers 96.7% of PF03661, 322.4 bits

TMM33_HUMAN / P57088 Transmembrane protein 33; Protein DB83; SHINC-3 from Homo sapiens (Human) (see 3 papers)
F7H2H1 Transmembrane protein 33 from Macaca mulatta
NP_060596 transmembrane protein 33 from Homo sapiens
Aligns to 7:245 / 247 (96.8%), covers 96.7% of PF03661, 319.8 bits

XP_017214478 transmembrane protein 33 isoform X1 from Danio rerio
Aligns to 11:250 / 252 (95.2%), covers 97.9% of PF03661, 319.6 bits

KRH2_DROME / Q9V447 Krueppel homolog 2; Protein Kr-h2 from Drosophila melanogaster (Fruit fly) (see paper)
Aligns to 31:268 / 276 (86.2%), covers 97.5% of PF03661, 300.4 bits

Q9CWD1 Uncharacterized protein from Mus musculus
Aligns to 7:177 / 177 (96.6%), covers 68.5% of PF03661, 211.9 bits

CNAG_02753 endoplasmic reticulum protein from Cryptococcus neoformans var. grubii H99
Aligns to 6:248 / 278 (87.4%), covers 80.9% of PF03661, 132.8 bits

TTS1_SCHPO / Q9Y7Z5 Tetra-spanning protein 1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
tts1 tetra spanning protein 1, Tts1 from Schizosaccharomyces pombe (see 4 papers)
NP_596818 tetra-spanning protein 1 from Schizosaccharomyces pombe
SPBC1539.04 conserved eukaryotic protein (RefSeq) from Schizosaccharomyces pombe
Aligns to 6:258 / 279 (90.7%), covers 93.4% of PF03661, 120.5 bits

C0ND33 Uncharacterized protein from Ajellomyces capsulatus (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)
Aligns to 12:268 / 291 (88.3%), covers 93.4% of PF03661, 106.7 bits

TC 1.I.1.1.2 / G0S6T0 Nucleoporin POM33, component of Fungal Nuclear Pore Complex (NPC) with 29 components from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Aligns to 12:267 / 287 (89.2%), covers 90.5% of PF03661, 105.9 bits

POM33_YEAST / Q12164 Pore membrane protein of 33 kDa from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
NP_013077 nucleoporin POM33 from Saccharomyces cerevisiae S288C
YLL023C Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum (RefSeq) from Saccharomyces cerevisiae
Aligns to 15:265 / 279 (90.0%), covers 93.8% of PF03661, 86.2 bits

LOC104603094 transmembrane protein 33 homolog from Nelumbo nucifera
Aligns to 103:321 / 338 (64.8%), covers 75.5% of PF03661, 66.4 bits

Q9M898 AT3g02420/F16B3_5 from Arabidopsis thaliana
AT3G02420 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 113:327 / 348 (61.8%), covers 72.6% of PF03661, 59.1 bits

PVX_000960 secy-independent transporter protein, putative from Plasmodium vivax
Aligns to 85:308 / 315 (71.1%), covers 87.6% of PF03661, 37.9 bits

Or search for genetic data about PF03661 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory