PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF03665 (UPF0172)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

Running HMMer for PF03665

PF03665 hits 16 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q5FVL2 ER membrane protein complex subunit 8 from Rattus norvegicus
Aligns to 3:199 / 207 (95.2%), covers 99.5% of PF03665, 233.3 bits

O70378 ER membrane protein complex subunit 8 from Mus musculus
Aligns to 3:199 / 207 (95.2%), covers 99.5% of PF03665, 232.0 bits

EMC8_HUMAN / O43402 ER membrane protein complex subunit 8; Neighbor of COX4; Protein FAM158B from Homo sapiens (Human) (see 6 papers)
Aligns to 3:202 / 210 (95.2%), covers 99.5% of PF03665, 231.9 bits

EMC89_DROME / Q9W1Y1 ER membrane protein complex subunit 8/9 homolog from Drosophila melanogaster (Fruit fly) (see paper)
Aligns to 3:192 / 203 (93.6%), covers 98.4% of PF03665, 217.6 bits

XP_002522792 ER membrane protein complex subunit 8/9 homolog from Ricinus communis
Aligns to 8:202 / 204 (95.6%), covers 100.0% of PF03665, 210.8 bits

V7B979 MPN domain-containing protein from Phaseolus vulgaris
Aligns to 7:202 / 204 (96.1%), covers 99.0% of PF03665, 209.3 bits

EMC9_HUMAN / Q9Y3B6 ER membrane protein complex subunit 9; Protein FAM158A from Homo sapiens (Human) (see 5 papers)
NP_057133 ER membrane protein complex subunit 9 isoform a from Homo sapiens
Aligns to 3:191 / 208 (90.9%), covers 100.0% of PF03665, 205.4 bits

AT5G55940 emb2731 (embryo defective 2731) from Arabidopsis thaliana
Aligns to 10:206 / 208 (94.7%), covers 99.5% of PF03665, 195.3 bits

XP_001697758 uncharacterized protein from Chlamydomonas reinhardtii
Aligns to 4:200 / 213 (92.5%), covers 99.0% of PF03665, 184.4 bits

PF3D7_1139900 ER membrane protein complex subunit 8, putative from Plasmodium falciparum 3D7
Aligns to 5:193 / 198 (95.5%), covers 100.0% of PF03665, 156.5 bits

NP_001135760 ER membrane protein complex subunit 8 isoform 2 from Homo sapiens
Aligns to 3:126 / 126 (98.4%), covers 57.8% of PF03665, 153.0 bits

CNAG_03380 hypothetical protein from Cryptococcus neoformans var. grubii H99
Aligns to 5:199 / 208 (93.8%), covers 99.0% of PF03665, 121.6 bits

TGME49_249310 hypothetical protein from Toxoplasma gondii ME49
2 alignments in 51:302 / 337 (68.0%), covering up to 60.9% of PF03665, 111.5 bits

6fjuA / E6N8B9 Rpn11 homolog from caldiarchaeum subterraneum (see paper)
Aligns to 3:146 / 176 (81.8%), covers 62.0% of PF03665, 32.3 bits

E6N8B9 26S proteasome regulatory subunit N11-like protein from Caldiarchaeum subterraneum
Aligns to 2:142 / 202 (69.8%), covers 62.0% of PF03665, 31.7 bits

AT5G51620 hypothetical protein from Arabidopsis thaliana
Aligns to 1:66 / 68 (97.1%), covers 19.8% of PF03665, 31.2 bits

Or search for genetic data about PF03665 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory